PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
Nascimento, Marta, Sousa, Adriano, Ramirez, Mário, Francisco, Alexandre P, Carriço, João A, Vaz, Cátia
Published in Bioinformatics (Oxford, England) (01.01.2017)
Published in Bioinformatics (Oxford, England) (01.01.2017)
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Journal Article
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J, Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P, Carriço, João André, Achtman, Mark
Published in Genome research (01.09.2018)
Published in Genome research (01.09.2018)
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Distance-based phylogenetic inference from typing data: a unifying view
Vaz, Cátia, Nascimento, Marta, Carrico, Joao, Rocher, Tatiana, Francisco, Alexandre P.
Published in Briefings in bioinformatics (20.05.2021)
Published in Briefings in bioinformatics (20.05.2021)
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Journal Article
Citrobacter portucalensis sp. nov., isolated from an aquatic sample
Ribeiro, Teresa Gonçalves, Gonçalves, Bruno, Silva, Mickael, Novais, Ângela, Machado, Elisabete, Carrico, Joao, Peixe, Luísa
Published in International journal of systematic and evolutionary microbiology (01.09.2017)
Published in International journal of systematic and evolutionary microbiology (01.09.2017)
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Journal Article
Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis
Teixeira, Andreia Sofia, Monteiro, Pedro, Carrico, Joao, Ramos de Almeida Ramirez, Mário Nuno, Francisco, Alexandre P.
Published in PloS one (23.03.2015)
Published in PloS one (23.03.2015)
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Journal Article
Distinct phenotypic and genomic signatures underlie contrasting pathogenic potential of Staphylococcus epidermidis clonal lineages
Espadinha, Diana, Sobral, Rita G., Mendes, Inês, Méric, Guillaume, Sheppard, Samuel K., Carrico, Joao, de Lencastre, Hermínia, Miragaia, Maria
Published in Frontiers in microbiology (2019)
Published in Frontiers in microbiology (2019)
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Journal Article
Lactobacillus mulieris sp. nov., a new species of Lactobacillus delbrueckii group
Rocha, Joana, Botelho, João, Ksiezarek, Magdalena, Ugarcina Perovic, Svetlana, Machado, Miguel, Carrico, Joao, Pimentel, Lígia, Salsinha, Ana Sofia, Rodríguez-Alcalá, Luis Miguel, Pintado, Maria Manuela, Ribeiro, Teresa G., Peixe, Luísa
Published in International journal of systematic and evolutionary microbiology (01.03.2020)
Published in International journal of systematic and evolutionary microbiology (01.03.2020)
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Journal Article
Polymerase Chain Reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain
McMillan, Elizabeth A, Hiott, Lari M, Carrico, Joao Andre, Machado, Miguel P, Pouseele, Hannes, Jackson, Charlene R, Frye, Jonathan G
Published in Letters in applied microbiology (02.08.2023)
Published in Letters in applied microbiology (02.08.2023)
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Journal Article
Analysis of Typing Methods for Epidemiological Surveillance of both Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Strains
Faria, Nuno A, Carrico, João A, Oliveira, Duarte C, Ramirez, Mário, de Lencastre, Hermínia
Published in Journal of Clinical Microbiology (01.01.2008)
Published in Journal of Clinical Microbiology (01.01.2008)
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Journal Article
Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC
Silva-Costa, Catarina, Carriço, Joao A, Ramirez, Mario, Melo-Cristino, Jose
Published in The Pediatric infectious disease journal (01.03.2014)
Published in The Pediatric infectious disease journal (01.03.2014)
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Journal Article
Fast phylogenetic inference from typing data
Carriço, João A, Crochemore, Maxime, Francisco, Alexandre P, Pissis, Solon P, Ribeiro-Gonçalves, Bruno, Vaz, Cátia
Published in Algorithms for molecular biology (15.02.2018)
Published in Algorithms for molecular biology (15.02.2018)
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Journal Article
Natural occurrence of Escherichia coli-infecting bacteriophages in clinical samples
Pacífico, Cátia, Hilbert, Miriam, Sofka, Dmitrij, Dinhopl, Nora, Pap, Ildiko-Julia, Aspöck, Christoph, Carrico, Joao, Hilbert, Friederike
Published in Frontiers in microbiology (31.10.2019)
Published in Frontiers in microbiology (31.10.2019)
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Journal Article
Comparing matrix-assisted laser desorption ionization–time of flight mass spectrometry and phenotypic and molecular methods for identification of species within the Streptococcus anginosus group
Arinto-Garcia, Raquel, Caetano Borges de Pinho, Marcos Daniel, Carrico, Joao, Melo Cristino, José, Ramos de Almeida Ramirez, Mário Nuno
Published in Journal of clinical microbiology (01.11.2015)
Published in Journal of clinical microbiology (01.11.2015)
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Journal Article
Serum lipid alterations in GBA-associated Parkinson's disease
Guedes, Leonor Correia, Chan, Robin Barry, Gomes, Marcos António, Conceição, Vasco A., Machado, Raquel Bouça, Soares, Tiago, Xu, Yimeng, Gaspar, Paulo, Carriço, Joao André, Alcalay, Roy N., Ferreira, Joaquim J., Outeiro, Tiago Fleming, Miltenberger-Miltenyi, Gabriel
Published in Parkinsonism & related disorders (01.11.2017)
Published in Parkinsonism & related disorders (01.11.2017)
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