Proteomic Mapping of the Human Mitochondrial Intermembrane Space in Live Cells via Ratiometric APEX Tagging
Hung, Victoria, Zou, Peng, Rhee, Hyun-Woo, Udeshi, Namrata D., Cracan, Valentin, Svinkina, Tanya, Carr, Steven A., Mootha, Vamsi K., Ting, Alice Y.
Published in Molecular cell (17.07.2014)
Published in Molecular cell (17.07.2014)
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TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach[S]
Zecha, Jana, Satpathy, Shankha, Kanashova, Tamara, Avanessian, Shayan C., Kane, M. Harry, Clauser, Karl R., Mertins, Philipp, Carr, Steven A., Kuster, Bernhard
Published in Molecular & cellular proteomics (01.07.2019)
Published in Molecular & cellular proteomics (01.07.2019)
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The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices
Naba, Alexandra, Clauser, Karl R., Hoersch, Sebastian, Liu, Hui, Carr, Steven A., Hynes, Richard O.
Published in Molecular & cellular proteomics (01.04.2012)
Published in Molecular & cellular proteomics (01.04.2012)
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Large-scale identification of ubiquitination sites by mass spectrometry
Udeshi, Namrata D, Mertins, Philipp, Svinkina, Tanya, Carr, Steven A
Published in Nature protocols (01.10.2013)
Published in Nature protocols (01.10.2013)
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The extracellular matrix: Tools and insights for the “omics” era
Naba, Alexandra, Clauser, Karl R., Ding, Huiming, Whittaker, Charles A., Carr, Steven A., Hynes, Richard O.
Published in Matrix biology (01.01.2016)
Published in Matrix biology (01.01.2016)
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Cancer proteogenomics: current impact and future prospects
Mani, D. R., Krug, Karsten, Zhang, Bing, Satpathy, Shankha, Clauser, Karl R., Ding, Li, Ellis, Matthew, Gillette, Michael A., Carr, Steven A.
Published in Nature reviews. Cancer (01.05.2022)
Published in Nature reviews. Cancer (01.05.2022)
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Split-TurboID enables contact-dependent proximity labeling in cells
Cho, Kelvin F., Branon, Tess C., Rajeev, Sanjana, Svinkina, Tanya, Udeshi, Namrata D., Thoudam, Themis, Kwak, Chulhwan, Rhee, Hyun-Woo, Lee, In-Kyu, Carr, Steven A., Ting, Alice Y.
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
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Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging
Rhee, Hyun-Woo, Zou, Peng, Udeshi, Namrata D., Martell, Jeffrey D., Mootha, Vamsi K., Carr, Steven A., Ting, Alice Y.
Published in Science (American Association for the Advancement of Science) (15.03.2013)
Published in Science (American Association for the Advancement of Science) (15.03.2013)
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Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
Schwartz, Schraga, Mumbach, Maxwell R., Jovanovic, Marko, Wang, Tim, Maciag, Karolina, Bushkin, G. Guy, Mertins, Philipp, Ter-Ovanesyan, Dmitry, Habib, Naomi, Cacchiarelli, Davide, Sanjana, Neville E., Freinkman, Elizaveta, Pacold, Michael E., Satija, Rahul, Mikkelsen, Tarjei S., Hacohen, Nir, Zhang, Feng, Carr, Steven A., Lander, Eric S., Regev, Aviv
Published in Cell reports (Cambridge) (10.07.2014)
Published in Cell reports (Cambridge) (10.07.2014)
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The NORAD lncRNA assembles a topoisomerase complex critical for genome stability
Munschauer, Mathias, Nguyen, Celina T., Sirokman, Klara, Hartigan, Christina R., Hogstrom, Larson, Engreitz, Jesse M., Ulirsch, Jacob C., Fulco, Charles P., Subramanian, Vidya, Chen, Jenny, Schenone, Monica, Guttman, Mitchell, Carr, Steven A., Lander, Eric S.
Published in Nature (London) (01.09.2018)
Published in Nature (London) (01.09.2018)
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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
Abelin, Jennifer G., Keskin, Derin B., Sarkizova, Siranush, Hartigan, Christina R., Zhang, Wandi, Sidney, John, Stevens, Jonathan, Lane, William, Zhang, Guang Lan, Eisenhaure, Thomas M., Clauser, Karl R., Hacohen, Nir, Rooney, Michael S., Carr, Steven A., Wu, Catherine J.
Published in Immunity (Cambridge, Mass.) (21.02.2017)
Published in Immunity (Cambridge, Mass.) (21.02.2017)
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Spatiotemporally-resolved mapping of RNA binding proteins via functional proximity labeling reveals a mitochondrial mRNA anchor promoting stress recovery
Qin, Wei, Myers, Samuel A., Carey, Dominique K., Carr, Steven A., Ting, Alice Y.
Published in Nature communications (17.08.2021)
Published in Nature communications (17.08.2021)
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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
Fields, Alexander P., Rodriguez, Edwin H., Jovanovic, Marko, Stern-Ginossar, Noam, Haas, Brian J., Mertins, Philipp, Raychowdhury, Raktima, Hacohen, Nir, Carr, Steven A., Ingolia, Nicholas T., Regev, Aviv, Weissman, Jonathan S.
Published in Molecular cell (03.12.2015)
Published in Molecular cell (03.12.2015)
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A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks
Parnas, Oren, Jovanovic, Marko, Eisenhaure, Thomas M., Herbst, Rebecca H., Dixit, Atray, Ye, Chun Jimmie, Przybylski, Dariusz, Platt, Randall J., Tirosh, Itay, Sanjana, Neville E., Shalem, Ophir, Satija, Rahul, Raychowdhury, Raktima, Mertins, Philipp, Carr, Steven A., Zhang, Feng, Hacohen, Nir, Regev, Aviv
Published in Cell (30.07.2015)
Published in Cell (30.07.2015)
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Lenalidomide Causes Selective Degradation of IKZF1 and IKZF3 in Multiple Myeloma Cells
Krönke, Jan, Udeshi, Namrata D., Narla, Anupama, Grauman, Peter, Hurst, Slater N., McConkey, Marie, Svinkina, Tanya, Heckl, Dirk, Comer, Eamon, Li, Xiaoyu, Ciarlo, Christie, Hartman, Emily, Munshi, Nikhil, Schenone, Monica, Schreiber, Stuart L., Carr, Steven A., Ebert, Benjamin L
Published in Science (American Association for the Advancement of Science) (17.01.2014)
Published in Science (American Association for the Advancement of Science) (17.01.2014)
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Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation
Hung, Victoria, Lam, Stephanie S, Udeshi, Namrata D, Svinkina, Tanya, Guzman, Gaelen, Mootha, Vamsi K, Carr, Steven A, Ting, Alice Y
Published in eLife (25.04.2017)
Published in eLife (25.04.2017)
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Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona
Blume, John E., Manning, William C., Troiano, Gregory, Hornburg, Daniel, Figa, Michael, Hesterberg, Lyndal, Platt, Theodore L., Zhao, Xiaoyan, Cuaresma, Rea A., Everley, Patrick A., Ko, Marwin, Liou, Hope, Mahoney, Max, Ferdosi, Shadi, Elgierari, Eltaher M., Stolarczyk, Craig, Tangeysh, Behzad, Xia, Hongwei, Benz, Ryan, Siddiqui, Asim, Carr, Steven A., Ma, Philip, Langer, Robert, Farias, Vivek, Farokhzad, Omid C.
Published in Nature communications (22.07.2020)
Published in Nature communications (22.07.2020)
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