Genomic ancestry of North Africans supports back-to-Africa migrations
Henn, Brenna M, Botigué, Laura R, Gravel, Simon, Wang, Wei, Brisbin, Abra, Byrnes, Jake K, Fadhlaoui-Zid, Karima, Zalloua, Pierre A, Moreno-Estrada, Andres, Bertranpetit, Jaume, Bustamante, Carlos D, Comas, David
Published in PLoS genetics (01.01.2012)
Published in PLoS genetics (01.01.2012)
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Reconstructing the population genetic history of the Caribbean
Moreno-Estrada, Andrés, Gravel, Simon, Zakharia, Fouad, McCauley, Jacob L, Byrnes, Jake K, Gignoux, Christopher R, Ortiz-Tello, Patricia A, Martínez, Ricardo J, Hedges, Dale J, Morris, Richard W, Eng, Celeste, Sandoval, Karla, Acevedo-Acevedo, Suehelay, Norman, Paul J, Layrisse, Zulay, Parham, Peter, Martínez-Cruzado, Juan Carlos, Burchard, Esteban González, Cuccaro, Michael L, Martin, Eden R, Bustamante, Carlos D
Published in PLoS genetics (01.11.2013)
Published in PLoS genetics (01.11.2013)
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Journal Article
Reconstructing Native American migrations from whole-genome and whole-exome data
Gravel, Simon, Zakharia, Fouad, Moreno-Estrada, Andres, Byrnes, Jake K, Muzzio, Marina, Rodriguez-Flores, Juan L, Kenny, Eimear E, Gignoux, Christopher R, Maples, Brian K, Guiblet, Wilfried, Dutil, Julie, Via, Marc, Sandoval, Karla, Bedoya, Gabriel, Oleksyk, Taras K, Ruiz-Linares, Andres, Burchard, Esteban G, Martinez-Cruzado, Juan Carlos, Bustamante, Carlos D
Published in PLoS genetics (01.12.2013)
Published in PLoS genetics (01.12.2013)
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Journal Article
Ancestry inference using reference labeled clusters of haplotypes
Wang, Yong, Song, Shiya, Schraiber, Joshua G, Sedghifar, Alisa, Byrnes, Jake K, Turissini, David A, Hong, Eurie L, Ball, Catherine A, Noto, Keith
Published in BMC bioinformatics (25.09.2021)
Published in BMC bioinformatics (25.09.2021)
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Clustering of 770,000 genomes reveals post-colonial population structure of North America
Han, Eunjung, Carbonetto, Peter, Curtis, Ross E., Wang, Yong, Granka, Julie M., Byrnes, Jake, Noto, Keith, Kermany, Amir R., Myres, Natalie M., Barber, Mathew J., Rand, Kristin A., Song, Shiya, Roman, Theodore, Battat, Erin, Elyashiv, Eyal, Guturu, Harendra, Hong, Eurie L., Chahine, Kenneth G., Ball, Catherine A.
Published in Nature communications (07.02.2017)
Published in Nature communications (07.02.2017)
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Phased whole-genome genetic risk in a family quartet using a major allele reference sequence
Dewey, Frederick E, Chen, Rong, Cordero, Sergio P, Ormond, Kelly E, Caleshu, Colleen, Karczewski, Konrad J, Whirl-Carrillo, Michelle, Wheeler, Matthew T, Dudley, Joel T, Byrnes, Jake K, Cornejo, Omar E, Knowles, Joshua W, Woon, Mark, Sangkuhl, Katrin, Gong, Li, Thorn, Caroline F, Hebert, Joan M, Capriotti, Emidio, David, Sean P, Pavlovic, Aleksandra, West, Anne, Thakuria, Joseph V, Ball, Madeleine P, Zaranek, Alexander W, Rehm, Heidi L, Church, George M, West, John S, Bustamante, Carlos D, Snyder, Michael, Altman, Russ B, Klein, Teri E, Butte, Atul J, Ashley, Euan A
Published in PLoS genetics (01.09.2011)
Published in PLoS genetics (01.09.2011)
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The history and geographic distribution of a KCNQ1 atrial fibrillation risk allele
Hateley, Shannon, Lopez-Izquierdo, Angelica, Jou, Chuanchau J., Cho, Scott, Schraiber, Joshua G., Song, Shiya, Maguire, Colin T., Torres, Natalia, Riedel, Michael, Bowles, Neil E., Arrington, Cammon B., Kennedy, Brett J., Etheridge, Susan P., Lai, Shuping, Pribble, Chase, Meyers, Lindsay, Lundahl, Derek, Byrnes, Jake, Granka, Julie M., Kauffman, Christopher A., Lemmon, Gordon, Boyden, Steven, Scott Watkins, W., Karren, Mary Anne, Knight, Stacey, Brent Muhlestein, J., Carlquist, John F., Anderson, Jeffrey L., Chahine, Kenneth G., Shah, Khushi U., Ball, Catherine A., Benjamin, Ivor J., Yandell, Mark, Tristani-Firouzi, Martin
Published in Nature communications (08.11.2021)
Published in Nature communications (08.11.2021)
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A Prospective Analysis of Genetic Variants Associated with Human Lifespan
Wright, Kevin M, Rand, Kristin A, Kermany, Amir, Noto, Keith, Curtis, Don, Garrigan, Daniel, Slinkov, Dmitri, Dorfman, Ilya, Granka, Julie M, Byrnes, Jake, Myres, Natalie, Ball, Catherine A, Ruby, J Graham
Published in G3 : genes - genomes - genetics (01.09.2019)
Published in G3 : genes - genomes - genetics (01.09.2019)
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Journal Article
Whole genome transcriptome polymorphisms in Arabidopsis thaliana
Zhang, Xu, Byrnes, Jake K, Gal, Thomas S, Li, Wen-Hsiung, Borevitz, Justin O
Published in Genome biology (24.11.2008)
Published in Genome biology (24.11.2008)
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Journal Article
Parent-of-origin of HLA-DRB11501 and age of onset of multiple sclerosis
Ramagopalan, Sreeram V, Byrnes, Jake K, Dyment, David A, Guimond, Colleen, Handunnetthi, Lahiru, Disanto, Giulio, Yee, Irene M, Ebers, George C, Sadovnick, A Dessa
Published in Journal of human genetics (01.09.2009)
Published in Journal of human genetics (01.09.2009)
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Journal Article
Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes
Lin, Y.S, Byrnes, J.K, Hwang, J.K, Li, W.H
Published in Proceedings of the National Academy of Sciences - PNAS (26.09.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (26.09.2006)
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Journal Article
Estimates of the Heritability of Human Longevity Are Substantially Inflated due to Assortative Mating
Ruby, J Graham, Wright, Kevin M, Rand, Kristin A, Kermany, Amir, Noto, Keith, Curtis, Don, Varner, Neal, Garrigan, Daniel, Slinkov, Dmitri, Dorfman, Ilya, Granka, Julie M, Byrnes, Jake, Myres, Natalie, Ball, Catherine
Published in Genetics (Austin) (01.11.2018)
Published in Genetics (Austin) (01.11.2018)
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Journal Article
Bayesian refinement of association signals for 14 loci in 3 common diseases
Maller, Julian B, McVean, Gilean, Byrnes, Jake, Vukcevic, Damjan, Palin, Kimmo, Su, Zhan, Howson, Joanna M M, Auton, Adam, Myers, Simon, Morris, Andrew, Pirinen, Matti, Brown, Matthew A, Burton, Paul R, Caulfield, Mark J, Compston, Alastair, Farrall, Martin, Hall, Alistair S, Hattersley, Andrew T, Hill, Adrian V S, Mathew, Christopher G, Pembrey, Marcus, Satsangi, Jack, Stratton, Michael R, Worthington, Jane, Craddock, Nick, Hurles, Matthew, Ouwehand, Willem, Parkes, Miles, Rahman, Nazneen, Duncanson, Audrey, Todd, John A, Kwiatkowski, Dominic P, Samani, Nilesh J, Gough, Stephen C L, McCarthy, Mark I, Deloukas, Panagiotis, Donnelly, Peter
Published in Nature genetics (01.12.2012)
Published in Nature genetics (01.12.2012)
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Term pregnancies and the clinical characteristics of multiple sclerosis: a population based study
Ramagopalan, Sreeram, Yee, Irene, Byrnes, Jake, Guimond, Colleen, Ebers, George, Sadovnick, Dessa
Published in Journal of neurology, neurosurgery and psychiatry (01.08.2012)
Published in Journal of neurology, neurosurgery and psychiatry (01.08.2012)
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Journal Article
PCAdmix: Principal Components-Based Assignment of Ancestry Along Each Chromosome in Individuals with Admixed Ancestry from Two or More Populations
Brisbin, Abra, Bryc, Katarzyna, Byrnes, Jake, Zakharia, Fouad, Omberg, Larsson, Degenhardt, Jeremiah, Reynolds, Andrew, Ostrer, Harry, Mezey, Jason G., Bustamante, Carlos D.
Published in Human biology (01.08.2012)
Published in Human biology (01.08.2012)
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Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data
Romagnoni, Alberto, Jégou, Simon, Van Steen, Kristel, Wainrib, Gilles, Hugot, Jean-Pierre
Published in Scientific reports (17.07.2019)
Published in Scientific reports (17.07.2019)
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Population Genetic Inference from Personal Genome Data: Impact of Ancestry and Admixture on Human Genomic Variation
KIDD, Jeffrey M, GRAVEL, Simon, MCLAUGHLIN, Stephen F, PECKHAM, Heather E, OMBERG, Larsson, BORMANN CHUNG, Christina A, STANLEY, Sarah, PEARLSTEIN, Kevin, LEVANDOWSKY, Elizabeth, ACEVEDO-ACEVEDO, Suehelay, AUTON, Adam, KEINAN, Alon, BYRNES, Jake, ACUNA-ALONZO, Victor, BARQUERA-LOZANO, Rodrigo, CANIZALES-QUINTEROS, Samuel, ENG, Celeste, BURCHARD, Esteban G, RUSSELL, Archie, REYNOLDS, Andy, CLARK, Andrew G, REESE, Martin G, LINCOLN, Stephen E, MORENO-ESTRADA, Andres, BUTTE, Atul J, DE LA VEGA, Francisco M, BUSTAMANTE, Carlos D, MUSHAROFF, Shaila, BRYC, Katarzyna, DEGENHARDT, Jeremiah D, BRISBIN, Abra, SHETH, Vrunda, RONG CHEN
Published in American journal of human genetics (05.10.2012)
Published in American journal of human genetics (05.10.2012)
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Journal Article
Reconstructing Native American Migrations from Whole-Genome and Whole-Exome Data: e1004023
Gravel, Simon, Zakharia, Fouad, Moreno-Estrada, Andres, Byrnes, Jake K, Muzzio, Marina, Rodriguez-Flores, Juan L, Kenny, Eimear E, Gignoux, Christopher R, Maples, Brian K, Guiblet, Wilfried, Dutil, Julie, Via, Marc, Sandoval, Karla, Bedoya, Gabriel, Oleksyk, Taras K, Ruiz-Linares, Andres, Burchard, Esteban G, Martinez-Cruzado, Juan Carlos, Bustamante, Carlos D, Project, The 1000Genomes
Published in PLoS genetics (01.12.2013)
Published in PLoS genetics (01.12.2013)
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