Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution
Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa
Published in Nature communications (23.07.2021)
Published in Nature communications (23.07.2021)
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Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
Hughes, Lily C., Ortí, Guillermo, Huang, Yu, Sun, Ying, Baldwin, Carole C., Thompson, Andrew W., Arcila, Dahiana, Betancur-R., Ricardo, Li, Chenhong, Becker, Leandro, Bellora, Nicolás, Zhao, Xiaomeng, Li, Xiaofeng, Wang, Min, Fang, Chao, Xie, Bing, Zhou, Zhuocheng, Huang, Hai, Chen, Songlin, Venkatesh, Byrappa, Shi, Qiong
Published in Proceedings of the National Academy of Sciences - PNAS (12.06.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (12.06.2018)
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Chromosome-level assembly of the horseshoe crab genome provides insights into its genome evolution
Shingate, Prashant, Ravi, Vydianathan, Prasad, Aravind, Tay, Boon-Hui, Garg, Kritika M., Chattopadhyay, Balaji, Yap, Laura-Marie, Rheindt, Frank E., Venkatesh, Byrappa
Published in Nature communications (08.05.2020)
Published in Nature communications (08.05.2020)
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A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubripes (fugu)
Kamiya, Takashi, Kai, Wataru, Tasumi, Satoshi, Oka, Ayumi, Matsunaga, Takayoshi, Mizuno, Naoki, Fujita, Masashi, Suetake, Hiroaki, Suzuki, Shigenori, Hosoya, Sho, Tohari, Sumanty, Brenner, Sydney, Miyadai, Toshiaki, Venkatesh, Byrappa, Suzuki, Yuzuru, Kikuchi, Kiyoshi
Published in PLoS genetics (01.07.2012)
Published in PLoS genetics (01.07.2012)
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Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
Li, Chunyan, Olave, Melisa, Hou, Yali, Qin, Geng, Schneider, Ralf F., Gao, Zexia, Tu, Xiaolong, Wang, Xin, Qi, Furong, Nater, Alexander, Kautt, Andreas F., Wan, Shiming, Zhang, Yanhong, Liu, Yali, Zhang, Huixian, Zhang, Bo, Zhang, Hao, Qu, Meng, Liu, Shuaishuai, Chen, Zeyu, Zhong, Jia, Zhang, He, Meng, Lingfeng, Wang, Kai, Yin, Jianping, Huang, Liangmin, Venkatesh, Byrappa, Meyer, Axel, Lu, Xuemei, Lin, Qiang
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
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Transcriptional activation of elephant shark mineralocorticoid receptor by corticosteroids, progesterone, and spironolactone
Katsu, Yoshinao, Kohno, Satomi, Oka, Kaori, Lin, Xiaozhi, Otake, Sumika, Pillai, Nisha E, Takagi, Wataru, Hyodo, Susumu, Venkatesh, Byrappa, Baker, Michael E
Published in Science signaling (04.06.2019)
Published in Science signaling (04.06.2019)
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The seahorse genome and the evolution of its specialized morphology
Lin, Qiang, Fan, Shaohua, Zhang, Yanhong, Xu, Meng, Zhang, Huixian, Yang, Yulan, Lee, Alison P., Woltering, Joost M., Ravi, Vydianathan, Gunter, Helen M., Luo, Wei, Gao, Zexia, Lim, Zhi Wei, Qin, Geng, Schneider, Ralf F., Wang, Xin, Xiong, Peiwen, Li, Gang, Wang, Kai, Min, Jiumeng, Zhang, Chi, Qiu, Ying, Bai, Jie, He, Weiming, Bian, Chao, Zhang, Xinhui, Shan, Dai, Qu, Hongyue, Sun, Ying, Gao, Qiang, Huang, Liangmin, Shi, Qiong, Meyer, Axel, Venkatesh, Byrappa
Published in Nature (London) (15.12.2016)
Published in Nature (London) (15.12.2016)
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Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum)
Mehta, Tarang K., Ravi, Vydianathan, Yamasaki, Shinichi, Lee, Alison P., Lian, Michelle M., Tay, Boon-Hui, Tohari, Sumanty, Yanai, Seiji, Tay, Alice, Brenner, Sydney, Venkatesh, Byrappa
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (01.10.2013)
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Journal Article
Chromosome‐level genome assembly of the coastal horseshoe crab (Tachypleus gigas)
Shingate, Prashant, Ravi, Vydianathan, Prasad, Aravind, Tay, Boon‐Hui, Venkatesh, Byrappa
Published in Molecular ecology resources (01.11.2020)
Published in Molecular ecology resources (01.11.2020)
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Journal Article
The Ancient Origins of Neural Substrates for Land Walking
Jung, Heekyung, Baek, Myungin, D’Elia, Kristen P., Boisvert, Catherine, Currie, Peter D., Tay, Boon-Hui, Venkatesh, Byrappa, Brown, Stuart M., Heguy, Adriana, Schoppik, David, Dasen, Jeremy S.
Published in Cell (08.02.2018)
Published in Cell (08.02.2018)
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Publisher Correction: Reconstruction of proto-vertebrate, protocyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution
Nakatani, Yoichiro, Shingate, Prashant, Ravi, Vydianathan, Pillai, Nisha E., Prasad, Aravind, McLysaght, Aoife, Venkatesh, Byrappa
Published in Nature communications (29.07.2021)
Published in Nature communications (29.07.2021)
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Immunogenetic losses co-occurred with seahorse male pregnancy and mutation in tlx1 accompanied functional asplenia
Liu, Yali, Qu, Meng, Jiang, Han, Schneider, Ralf, Qin, Geng, Luo, Wei, Yu, Haiyan, Zhang, Bo, Wang, Xin, Zhang, Yanhong, Zhang, Huixian, Zhang, Zhixin, Wu, Yongli, Zhang, Yingyi, Yin, Jianping, Zhang, Si, Venkatesh, Byrappa, Roth, Olivia, Meyer, Axel, Lin, Qiang
Published in Nature communications (09.12.2022)
Published in Nature communications (09.12.2022)
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Reversal of Phenotypic Abnormalities by CRISPR/Cas9-Mediated Gene Correction in Huntington Disease Patient-Derived Induced Pluripotent Stem Cells
Xu, Xiaohong, Tay, Yilin, Sim, Bernice, Yoon, Su-In, Huang, Yihui, Ooi, Jolene, Utami, Kagistia Hana, Ziaei, Amin, Ng, Bryan, Radulescu, Carola, Low, Donovan, Ng, Alvin Yu Jin, Loh, Marie, Venkatesh, Byrappa, Ginhoux, Florent, Augustine, George J., Pouladi, Mahmoud A.
Published in Stem cell reports (14.03.2017)
Published in Stem cell reports (14.03.2017)
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Retention of fatty acyl desaturase 1 (fads1) in Elopomorpha and Cyclostomata provides novel insights into the evolution of long-chain polyunsaturated fatty acid biosynthesis in vertebrates
Lopes-Marques, Mónica, Kabeya, Naoki, Qian, Yu, Ruivo, Raquel, Santos, Miguel M, Venkatesh, Byrappa, Tocher, Douglas R, Castro, L Filipe C, Monroig, Óscar
Published in BMC evolutionary biology (19.10.2018)
Published in BMC evolutionary biology (19.10.2018)
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Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes
Kojo, Satoshi, Tanaka, Hirokazu, Endo, Takaho A., Muroi, Sawako, Liu, Ye, Seo, Wooseok, Tenno, Mari, Kakugawa, Kiyokazu, Naoe, Yoshinori, Nair, Krutula, Moro, Kazuyo, Katsuragi, Yoshinori, Kanai, Akinori, Inaba, Toshiya, Egawa, Takeshi, Venkatesh, Byrappa, Minoda, Aki, Kominami, Ryo, Taniuchi, Ichiro
Published in Nature communications (26.09.2017)
Published in Nature communications (26.09.2017)
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Evolutionary functional elaboration of the Elovl2/5 gene family in chordates
Monroig, Óscar, Lopes-Marques, Mónica, Navarro, Juan C., Hontoria, Francisco, Ruivo, Raquel, Santos, Miguel M., Venkatesh, Byrappa, Tocher, Douglas R., C. Castro, L. Filipe
Published in Scientific reports (09.02.2016)
Published in Scientific reports (09.02.2016)
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Journal Article
Characterization of the neurohypophysial hormone gene loci in elephant shark and the Japanese lamprey: origin of the vertebrate neurohypophysial hormone genes
Gwee, Pai-Chung, Tay, Boon-Hui, Brenner, Sydney, Venkatesh, Byrappa
Published in BMC evolutionary biology (26.02.2009)
Published in BMC evolutionary biology (26.02.2009)
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The emergence of the brain non-CpG methylation system in vertebrates
de Mendoza, Alex, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Albertin, Caroline B., Daish, Tasman, Bertrand, Stephanie, de la Calle-Mustienes, Elisa, Gómez-Skarmeta, José Luis, Nery, Joseph R., Ecker, Joseph R., Baer, Boris, Ragsdale, Clifton W., Grützner, Frank, Escriva, Hector, Venkatesh, Byrappa, Bogdanovic, Ozren, Lister, Ryan
Published in Nature ecology & evolution (01.03.2021)
Published in Nature ecology & evolution (01.03.2021)
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