miR-193a-3p is a Key Tumor Suppressor in Ulcerative Colitis-Associated Colon Cancer and Promotes Carcinogenesis through Upregulation of IL17RD
Pekow, Joel, Meckel, Katherine, Dougherty, Urszula, Huang, Yong, Chen, Xindi, Almoghrabi, Anas, Mustafi, Reba, Ayaloglu-Butun, Fatma, Deng, Zifeng, Haider, Haider I, Hart, John, Rubin, David T, Kwon, John H, Bissonnette, Marc
Published in Clinical cancer research (01.09.2017)
Published in Clinical cancer research (01.09.2017)
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Journal Article
Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs
Caesar, Lindsay K., Butun, Fatma A., Robey, Matthew T., Ayon, Navid J., Gupta, Raveena, Dainko, David, Bok, Jin Woo, Nickles, Grant, Stankey, Robert J., Johnson, Don, Mead, David, Cank, Kristof B., Earp, Cody E., Raja, Huzefa A., Oberlies, Nicholas H., Keller, Nancy P., Kelleher, Neil L.
Published in Nature chemical biology (01.07.2023)
Published in Nature chemical biology (01.07.2023)
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Journal Article
Epigenetic Reprogramming of Host and Viral Genes by Human Cytomegalovirus Infection in Kasumi-3 Myeloid Progenitor Cells at Early Times Postinfection
Forte, Eleonora, Ayaloglu Butun, Fatma, Marinaccio, Christian, Schipma, Matthew J, Piunti, Andrea, Schroeder, Mark W, Kandpal, Manoj, Shilatifard, Ali, Abecassis, Michael, Hummel, Mary
Published in Journal of virology (01.06.2021)
Published in Journal of virology (01.06.2021)
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Journal Article
ADAM17 is a Tumor Promoter and Therapeutic Target in Western Diet-associated Colon Cancer
Mustafi, Reba, Dougherty, Urszula, Mustafi, Devkumar, Ayaloglu-Butun, Fatma, Fletcher, Michelle, Adhikari, Sarbani, Sadiq, Farhana, Meckel, Katherine, Haider, Haider I, Khalil, Abdurahman, Pekow, Joel, Konda, Vani, Joseph, Loren, Hart, John, Fichera, Alessandro, Li, Yan Chun, Bissonnette, Marc
Published in Clinical cancer research (15.01.2017)
Published in Clinical cancer research (15.01.2017)
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Journal Article
Tumor suppressors miR-143 and miR-145 and predicted target proteins API5, ERK5, K-RAS, and IRS-1 are differentially expressed in proximal and distal colon
Pekow, Joel, Meckel, Katherine, Dougherty, Urszula, Butun, Fatma, Mustafi, Reba, Lim, John, Crofton, Charis, Chen, Xindi, Joseph, Loren, Bissonnette, Marc
Published in American journal of physiology: Gastrointestinal and liver physiology (01.02.2015)
Published in American journal of physiology: Gastrointestinal and liver physiology (01.02.2015)
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Journal Article
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer
Chapman, Christopher G., Mariani, Christopher J., Wu, Feng, Meckel, Katherine, Butun, Fatma, Chuang, Alice, Madzo, Jozef, Bissonnette, Marc B., Kwon, John H., Godley, Lucy A.
Published in Scientific reports (03.12.2015)
Published in Scientific reports (03.12.2015)
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Journal Article
Bioactivity-driven fungal metabologenomics identifies antiproliferative stemphone analogs and their biosynthetic gene cluster
Ayon, Navid J., Earp, Cody E., Gupta, Raveena, Butun, Fatma A., Clements, Ashley E., Lee, Alexa G., Dainko, David, Robey, Matthew T., Khin, Manead, Mardiana, Lina, Longcake, Alexandra, Rangel-Grimaldo, Manuel, Hall, Michael J., Probert, Michael R., Burdette, Joanna E., Keller, Nancy P., Raja, Huzefa A., Oberlies, Nicholas H., Kelleher, Neil L., Caesar, Lindsay K.
Published in Metabolomics (02.08.2024)
Published in Metabolomics (02.08.2024)
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Journal Article
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in OriLyt
Forte, Eleonora, Li, Ming, Ayaloglu Butun, Fatma, Hu, Qiaolin, Borst, Eva Maria, Schipma, Matthew J., Piunti, Andrea, Shilatifard, Ali, Terhune, Scott S., Abecassis, Michael, Meier, Jeffery L., Hummel, Mary
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
Terpenoid balance in Aspergillus nidulans unveiled by heterologous squalene synthase expression
Park, Sung Chul, Steffan, Breanne N, Yun Lim, Fang, Gupta, Raveena, Ayaloglu Butun, Fatma, Chen, Hongyu, Ye, Rosa, Decker, Timothy, Wu, Chengcang C, Kelleher, Neil L, Woo Bok, Jin, Keller, Nancy P
Published in Science advances (23.02.2024)
Published in Science advances (23.02.2024)
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Journal Article
Upregulation of polycistronic microRNA-143 and microRNA-145 in colonocytes suppresses colitis and inflammation-associated colon cancer
Dougherty, Urszula, Mustafi, Reba, Zhu, Hongyan, Zhu, Xiaorong, Deb, Dilip, Meredith, Stephen C., Ayaloglu-Butun, Fatma, Fletcher, Michelle, Sanchez, Arantxa, Pekow, Joel, Deng, Zifeng, Amini, Nader, Konda, Vani J, Rao, Vijaya L., Sakuraba, Atsushi, Kwesi, Akushika, Kupfer, Sonia S, Fichera, Alessandro, Joseph, Loren, Hart, John, He, Fang, He, Tong-Chuan, West-Szymanski, Diana, Li, Yan Chun, Bissonnette, Marc
Published in Epigenetics (02.12.2021)
Published in Epigenetics (02.12.2021)
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Journal Article
Single Cell Analysis of Proteoforms
Su, Pei, Hollas, Michael A. R., Butun, Fatma Ayaloglu, Kanchustambham, Vijaya Lakshmi, Rubakhin, Stanislav, Ramani, Namrata, Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Caldwell, Michael A., Sweedler, Jonathan V., Kafader, Jared O., Kelleher, Neil L.
Published in Journal of proteome research (07.06.2024)
Published in Journal of proteome research (07.06.2024)
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Journal Article
Correction to “Design, Synthesis, and Mechanistic Studies of (R)‑3-Amino-5,5-difluorocyclohex-1-ene-1-carboxylic Acid as an Inactivator of Human Ornithine Aminotransferase”
Devitt, Allison N., Vargas, Abigail L., Zhu, Wei, Des Soye, Benjamin James, Butun, Fatma Ayaloglu, Alt, Tyler, Kaley, Nicholas, Ferreira, Glaucio M., Moran, Graham R., Kelleher, Neil L., Liu, Dali, Silverman, Richard B.
Published in ACS chemical biology (16.08.2024)
Published in ACS chemical biology (16.08.2024)
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Journal Article
Design, Synthesis, and Mechanistic Studies of (R)‑3-Amino-5,5-difluorocyclohex-1-ene-1-carboxylic Acid as an Inactivator of Human Ornithine Aminotransferase
Devitt, Allison N., Vargas, Abigail L., Zhu, Wei, Des Soye, Benjamin James, Butun, Fatma Ayaloglu, Alt, Tyler, Kaley, Nicholas, Ferreira, Glaucio M., Moran, Graham R., Kelleher, Neil L., Liu, Dali, Silverman, Richard B.
Published in ACS chemical biology (17.05.2024)
Published in ACS chemical biology (17.05.2024)
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Journal Article
Resveratrol affects histone 3 lysine 27 methylation of vessels and blood biomarkers in DOCA salt-induced hypertension
Han, Sevtap, Uludag, Mecit Orhan, Usanmaz, Suzan Emel, Ayaloglu-Butun, Fatma, Akcali, Kamil Can, Demirel-Yilmaz, Emine
Published in Molecular biology reports (01.01.2015)
Published in Molecular biology reports (01.01.2015)
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Journal Article
Sa1668 PRE-MICRORNA-143 AND PRE-MICRORNA -145 TARGETED TO COLONOCYTES SUPPRESS COLITIS AND INFLAMMATION-ASSOCIATED COLON CANCER
Dougherty, Urszula, Mustafi, Reba, Zhu, Hongyan, Zhu, Xiaorong, Deb, Dilip, Meredith, Stephen C., Ayaloglu-Butun, Fatma, Fletcher, Michelle, Sanchez, Arantxa, Pekow, Joel R., Deng, Zifeng, Amini, Nader, Konda, Vani J., Kupfer, Sonia S., Fichera, Alessandro, Joseph, Loren, Hart, John A., West-Szymanski, Diana, Li, Yan Chun, Bissonnette, Marc
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2020)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2020)
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Journal Article
Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry
Su, Pei, McGee, John P, Durbin, Kenneth R, Hollas, Michael A R, Yang, Manxi, Neumann, Elizabeth K, Allen, Jamie L, Drown, Bryon S, Butun, Fatma Ayaloglu, Greer, Joseph B, Early, Bryan P, Fellers, Ryan T, Spraggins, Jeffrey M, Laskin, Julia, Camarillo, Jeannie M, Kafader, Jared O, Kelleher, Neil L
Published in Science advances (12.08.2022)
Published in Science advances (12.08.2022)
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Journal Article
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori Lyt
Forte, Eleonora, Li, Ming, Ayaloglu Butun, Fatma, Hu, Qiaolin, Borst, Eva Maria, Schipma, Matthew J, Piunti, Andrea, Shilatifard, Ali, Terhune, Scott S, Abecassis, Michael, Meier, Jeffery L, Hummel, Mary
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
miR-193a-3p is a key tumor suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through up-regulation of IL17RD
Pekow, Joel, Meckel, Katherine, Dougherty, Urszula, Huang, Yong, Chen, Xindi, Almoghrabi, Anas, Mustafi, Reba, Ayaloglu-Butun, Fatma, Deng, Zifeng, Haider, Haider I., Hart, John, Rubin, David T., Kwon, John H., Bissonnette, Marc
Published in Clinical cancer research (09.06.2017)
Published in Clinical cancer research (09.06.2017)
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Journal Article
Tu1972 - 5-Hydroxymethylcytosine (5hmC) DNA Profiles Distinguish Malignant Colonocytes from Non-Neoplastic Colonocytes and Tumor-Associated Stromal Cells
zhang, zhou, Lu, Xingyu, Nie, Ji, Ayaloglu-Butun, Fatma, Lu, Zhike, Khalil, Abdurahman, Haider, Haider, Dougherty, Urszula, Mustafi, Reba, Meckel, Katherine, Adhikari, Sarbani, Lu, Thomas, Pekow, Joel, Bissonnette, Marc, Zhang, Wei, He, Chuan
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
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Journal Article
5-Hydroxymethylcytosine (5hmC) DNA Profiles Distinguish Malignant Colonocytes from Non-Neoplastic Colonocytes and Tumor-Associated Stromal Cells
zhang, zhou, Lu, Xingyu, Nie, Ji, Ayaloglu-Butun, Fatma, Lu, Zhike, Khalil, Abdurahman, Haider, Haider, Dougherty, Urszula, Mustafi, Reba, Meckel, Katherine, Adhikari, Sarbani, Lu, Thomas, Pekow, Joel, Bissonnette, Marc, Zhang, Wei, He, Chuan
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2017)
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