A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
Danko, David C, Sierra, Maria A, Benardini, James N, Guan, Lisa, Wood, Jason M, Singh, Nitin, Seuylemezian, Arman, Butler, Daniel J, Ryon, Krista, Kuchin, Katerina, Meleshko, Dmitry, Bhattacharya, Chandrima, Venkateswaran, Kasthuri J, Mason, Christopher E
Published in Microbiome (01.04.2021)
Published in Microbiome (01.04.2021)
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Journal Article
Efficacy of Daily Intake of Dried Cranberry 500 mg in Women with Overactive Bladder: A Randomized, Double-Blind, Placebo Controlled Study
Cho, Ahra, Eidelberg, Andrew, Butler, Daniel J, Danko, David, Afshinnekoo, Ebrahim, Mason, Christopher E, Chughtai, Bilal
Published in The Journal of urology (01.02.2021)
Published in The Journal of urology (01.02.2021)
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Journal Article
The Privacy-Utility Tradeoff for Remotely Teleoperated Robots
Butler, Daniel J., Huang, Justin, Roesner, Franziska, Cakmak, Maya
Published in 2015 10th ACM/IEEE International Conference on Human-Robot Interaction (HRI) (02.03.2015)
Published in 2015 10th ACM/IEEE International Conference on Human-Robot Interaction (HRI) (02.03.2015)
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Conference Proceeding
Distinct and opposite effects of leukemogenic Idh and Tet2 mutations in hematopoietic stem and progenitor cells
Fortin, Jerome, Chiang, Ming-Feng, Meydan, Cem, Foox, Jonathan, Ramachandran, Parameswaran, Leca, Julie, Lemonnier, François, Li, Wanda Y, Gams, Miki S, Sakamoto, Takashi, Chu, Mandy, Tobin, Chantal, Laugesen, Eric, Robinson, Troy M, You-Ten, Annick, Butler, Daniel J, Berger, Thorsten, Minden, Mark D, Levine, Ross L, Guidos, Cynthia J, Melnick, Ari M, Mason, Christopher E, Mak, Tak W
Published in Proceedings of the National Academy of Sciences - PNAS (24.01.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (24.01.2023)
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Journal Article
Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications
Moore, Keith J M, Cahill, Jeremy, Aidelberg, Guy, Aronoff, Rachel, Bektaş, Ali, Bezdan, Daniela, Butler, Daniel J, Chittur, Sridar V, Codyre, Martin, Federici, Fernan, Tanner, Nathan A, Tighe, Scott W, True, Randy, Ware, Sarah B, Wyllie, Anne L, Afshin, Evan E, Bendesky, Andres, Chang, Connie B, Dela Rosa, 2nd, Richard, Elhaik, Eran, Erickson, David, Goldsborough, Andrew S, Grills, George, Hadasch, Kathrin, Hayden, Andrew, Her, Seong-Young, Karl, Julie A, Kim, Chang Hee, Kriegel, Alison J, Kunstman, Thomas, Landau, Zeph, Land, Kevin, Langhorst, Bradley W, Lindner, Ariel B, Mayer, Benjamin E, McLaughlin, Lee A, McLaughlin, Matthew T, Molloy, Jenny, Mozsary, Christopher, Nadler, Jerry L, D'Silva, Melinee, Ng, David, O'Connor, David H, Ongerth, Jerry E, Osuolale, Olayinka, Pinharanda, Ana, Plenker, Dennis, Ranjan, Ravi, Rosbash, Michael, Rotem, Assaf, Segarra, Jacob, Schürer, Stephan, Sherrill-Mix, Scott, Solo-Gabriele, Helena, To, Shaina, Vogt, Merly C, Yu, Albert D, Mason, Christopher E
Published in Journal of biomolecular techniques (01.09.2021)
Published in Journal of biomolecular techniques (01.09.2021)
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Journal Article
System-wide transcriptome damage and tissue identity loss in COVID-19 patients
Park, Jiwoon, Foox, Jonathan, Hether, Tyler, Danko, David C., Warren, Sarah, Kim, Youngmi, Reeves, Jason, Butler, Daniel J., Mozsary, Christopher, Rosiene, Joel, Shaiber, Alon, Afshin, Evan E., MacKay, Matthew, Rendeiro, André F., Bram, Yaron, Chandar, Vasuretha, Geiger, Heather, Craney, Arryn, Velu, Priya, Melnick, Ari M., Hajirasouliha, Iman, Beheshti, Afshin, Taylor, Deanne, Saravia-Butler, Amanda, Singh, Urminder, Wurtele, Eve Syrkin, Schisler, Jonathan, Fennessey, Samantha, Corvelo, André, Zody, Michael C., Germer, Soren, Salvatore, Steven, Levy, Shawn, Wu, Shixiu, Tatonetti, Nicholas P., Shapira, Sagi, Salvatore, Mirella, Westblade, Lars F., Cushing, Melissa, Rennert, Hanna, Kriegel, Alison J., Elemento, Olivier, Imielinski, Marcin, Rice, Charles M., Borczuk, Alain C., Meydan, Cem, Schwartz, Robert E., Mason, Christopher E.
Published in Cell reports. Medicine (15.02.2022)
Published in Cell reports. Medicine (15.02.2022)
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Journal Article
Efficacy of daily intake of Dried Cranberry 500mg in Women with Overactive Bladder: A Randomized, Double-blind, Placebo-controlled Study
Cho, Ahra, Eidelberg, Andrew, Butler, Daniel J., Danko, David, Afshinnekoo, Ebrahim, Mason, Christopher E., Chughtai, Bilal
Published in The Journal of urology (18.09.2020)
Published in The Journal of urology (18.09.2020)
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Journal Article
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Park, Jiwoon, Foox, Jonathan, Hether, Tyler, Danko, David, Warren, Sarah, Kim, Youngmi, Reeves, Jason, Butler, Daniel J, Mozsary, Christopher, Rosiene, Joel, Shaiber, Alon, Afshinnekoo, Ebrahim, MacKay, Matthew, Bram, Yaron, Chandar, Vasuretha, Geiger, Heather, Craney, Arryn, Velu, Priya, Melnick, Ari M, Hajirasouliha, Iman, Beheshti, Afshin, Taylor, Deanne, Saravia-Butler, Amanda, Singh, Urminder, Wurtele, Eve Syrkin, Schisler, Jonathan, Fennessey, Samantha, Corvelo, André, Zody, Michael C, Germer, Soren, Salvatore, Steven, Levy, Shawn, Wu, Shixiu, Tatonetti, Nicholas, Shapira, Sagi, Salvatore, Mirella, Loda, Massimo, Westblade, Lars F, Cushing, Melissa, Rennert, Hanna, Kriegel, Alison J, Elemento, Olivier, Imielinski, Marcin, Borczuk, Alain C, Meydan, Cem, Schwartz, Robert E, Mason, Christopher E
Published in bioRxiv (09.03.2021)
Published in bioRxiv (09.03.2021)
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Paper
Interactive scene segmentation for efficient human-in-the-loop robot manipulation
Butler, Daniel J., Elliot, Sarah, Cakmak, Maya
Published in 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) (01.09.2017)
Published in 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) (01.09.2017)
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Conference Proceeding
The Space Omics and Medical Atlas (SOMA) and international astronaut biobank
Overbey, Eliah G., Kim, JangKeun, Tierney, Braden T., Park, Jiwoon, Houerbi, Nadia, Lucaci, Alexander G., Garcia Medina, Sebastian, Damle, Namita, Najjar, Deena, Grigorev, Kirill, Afshin, Evan E., Ryon, Krista A., Sienkiewicz, Karolina, Klotz, Remi, Ortiz, Veronica, MacKay, Matthew, Schweickart, Annalise, Sierra, Maria A., Valenzuela, Matias F., Dantas, Ezequiel, Nelson, Theodore M., Foox, Jonathan, Narayanan, S. Anand, Schmidt, Caleb M., Schmidt, Michael A., Schmidt, Julian C., Mullane, Sean, Tigchelaar, Seth Stravers, Levitte, Steven, Westover, Craig, Bhattacharya, Chandrima, Lucotti, Serena, Wain Hirschberg, Jeremy, Proszynski, Jacqueline, Burke, Marissa, Kleinman, Ashley S., Loy, Conor, Mzava, Omary, Lenz, Joan, Paul, Doru, Mozsary, Christopher, Sanders, Lauren M., Taylor, Lynn E., Khan, Sharib A., Suhail Mohamad, Mir, Byhaqui, Syed Gufran Ahmad, Gajadhar, Aaron S., Tandel, Purvi, Yang, Qiu, Chu, Jessica, Benz, Ryan W., Siddiqui, Asim, Hornburg, Daniel, Blease, Kelly, Moreno, Juan, Boddicker, Andrew, Zhao, Junhua, Lajoie, Bryan, Scott, Ryan T., Gilbert, Rachel R., Lai Polo, San-huei, Altomare, Andrew, Kruglyak, Semyon, Levy, Shawn, Ariyapala, Ishara, Beer, Joanne, Zhang, Bingqing, Hudson, Briana M., Rininger, Aric, Church, Sarah E., Beheshti, Afshin, Church, George M., Smith, Scott M., Crucian, Brian E., Zwart, Sara R., Matei, Irina, Lyden, David C., Garrett-Bakelman, Francine, Krumsiek, Jan, Chen, Qiuying, Miller, Dawson, Shuga, Joe, Williams, Stephen, Nemec, Corey, Trudel, Guy, Pelchat, Martin, Laneuville, Odette, De Vlaminck, Iwijn, Gross, Steven, Bolton, Kelly L., Bailey, Susan M., Furman, David, Melnick, Ari M., Costes, Sylvain V., Shirah, Bader, Yu, Min, Menon, Anil S., Mateus, Jaime, Meydan, Cem, Mason, Christopher E.
Published in Nature (London) (29.08.2024)
Published in Nature (London) (29.08.2024)
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Journal Article
Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions
Butler, Daniel J, Mozsary, Christopher, Meydan, Cem, Danko, David, Foox, Jonathan, Rosiene, Joel, Shaiber, Alon, Afshinnekoo, Ebrahim, MacKay, Matthew, Sedlazeck, Fritz J, Ivanov, Nikolay A, Sierra, Maria, Pohle, Diana, Zietz, Michael, Gisladottir, Undina, Ramlall, Vijendra, Westover, Craig D, Ryon, Krista, Young, Benjamin, Bhattacharya, Chandrima, Ruggiero, Phyllis, Langhorst, Bradley W, Tanner, Nathan, Gawrys, Justyna, Meleshko, Dmitry, Xu, Dong, Steel, Peter A D, Shemesh, Amos J, Xiang, Jenny, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Schwartz, Robert E, Iftner, Angelika, Bezdan, Daniela, Sipley, John, Cong, Lin, Craney, Arryn, Velu, Priya, Melnick, Ari M, Hajirasouliha, Iman, Horner, Stacy M, Iftner, Thomas, Salvatore, Mirella, Loda, Massimo, Westblade, Lars F, Cushing, Melissa, Levy, Shawn, Wu, Shixiu, Tatonetti, Nicholas, Imielinski, Marcin, Rennert, Hanna, Mason, Christopher E
Published in bioRxiv (01.05.2020)
Published in bioRxiv (01.05.2020)
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A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency
Jones, Wendell, Gong, Binsheng, Novoradovskaya, Natalia, Li, Dan, Kusko, Rebecca, Richmond, Todd A, Johann, Jr, Donald J, Bisgin, Halil, Sahraeian, Sayed Mohammad Ebrahim, Bushel, Pierre R, Pirooznia, Mehdi, Wilkins, Katherine, Chierici, Marco, Bao, Wenjun, Basehore, Lee Scott, Lucas, Anne Bergstrom, Burgess, Daniel, Butler, Daniel J, Cawley, Simon, Chang, Chia-Jung, Chen, Guangchun, Chen, Tao, Chen, Yun-Ching, Craig, Daniel J, Del Pozo, Angela, Foox, Jonathan, Francescatto, Margherita, Fu, Yutao, Furlanello, Cesare, Giorda, Kristina, Grist, Kira P, Guan, Meijian, Hao, Yingyi, Happe, Scott, Hariani, Gunjan, Haseley, Nathan, Jasper, Jeff, Jurman, Giuseppe, Kreil, David Philip, Łabaj, Paweł, Lai, Kevin, Li, Jianying, Li, Quan-Zhen, Li, Yulong, Li, Zhiguang, Liu, Zhichao, López, Mario Solís, Miclaus, Kelci, Miller, Raymond, Mittal, Vinay K, Mohiyuddin, Marghoob, Pabón-Peña, Carlos, Parsons, Barbara L, Qiu, Fujun, Scherer, Andreas, Shi, Tieliu, Stiegelmeyer, Suzy, Suo, Chen, Tom, Nikola, Wang, Dong, Wen, Zhining, Wu, Leihong, Xiao, Wenzhong, Xu, Chang, Yu, Ying, Zhang, Jiyang, Zhang, Yifan, Zhang, Zhihong, Zheng, Yuanting, Mason, Christopher E, Willey, James C, Tong, Weida, Shi, Leming, Xu, Joshua
Published in Genome Biology (16.04.2021)
Published in Genome Biology (16.04.2021)
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Journal Article
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
Gong, Binsheng, Li, Dan, Kusko, Rebecca, Novoradovskaya, Natalia, Zhang, Yifan, Wang, Shangzi, Pabón-Peña, Carlos, Zhang, Zhihong, Lai, Kevin, Cai, Wanshi, LoCoco, Jennifer S, Lader, Eric, Richmond, Todd A, Mittal, Vinay K, Liu, Liang-Chun, Johann, Jr, Donald J, Willey, James C, Bushel, Pierre R, Yu, Ying, Xu, Chang, Chen, Guangchun, Burgess, Daniel, Cawley, Simon, Giorda, Kristina, Haseley, Nathan, Qiu, Fujun, Wilkins, Katherine, Arib, Hanane, Attwooll, Claire, Babson, Kevin, Bao, Longlong, Bao, Wenjun, Lucas, Anne Bergstrom, Best, Hunter, Bhandari, Ambica, Bisgin, Halil, Blackburn, James, Blomquist, Thomas M, Boardman, Lisa, Burgher, Blake, Butler, Daniel J, Chang, Chia-Jung, Chaubey, Alka, Chen, Tao, Chierici, Marco, Chin, Christopher R, Close, Devin, Conroy, Jeffrey, Cooley Coleman, Jessica, Craig, Daniel J, Crawford, Erin, Del Pozo, Angela, Deveson, Ira W, Duncan, Daniel, Eterovic, Agda Karina, Fan, Xiaohui, Foox, Jonathan, Furlanello, Cesare, Ghosal, Abhisek, Glenn, Sean, Guan, Meijian, Haag, Christine, Hang, Xinyi, Happe, Scott, Hennigan, Brittany, Hipp, Jennifer, Hong, Huixiao, Horvath, Kyle, Hu, Jianhong, Hung, Li-Yuan, Jarosz, Mirna, Kerkhof, Jennifer, Kipp, Benjamin, Kreil, David Philip, Łabaj, Paweł, Lapunzina, Pablo, Li, Peng, Li, Quan-Zhen, Li, Weihua, Li, Zhiguang, Liang, Yu, Liu, Shaoqing, Liu, Zhichao, Ma, Charles, Marella, Narasimha, Martín-Arenas, Rubén, Megherbi, Dalila B, Meng, Qingchang, Mieczkowski, Piotr A, Morrison, Tom, Muzny, Donna, Ning, Baitang, Parsons, Barbara L, Paweletz, Cloud P, Pirooznia, Mehdi, Qu, Wubin, Raymond, Amelia, Rindler, Paul, Ringler, Rebecca, Sadikovic, Bekim
Published in Genome Biology (16.04.2021)
Published in Genome Biology (16.04.2021)
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Journal Article
Abstract A16: Multi-omic analyses in genetically engineered mice reveal distinct and opposite effects of leukemogenic Idh and Tet2 mutations in hematopoietic stem and progenitor cells
Fortin, Jerome, Chiang, Ming-Feng, Meydan, Cem, Foox, Jonathan, Ramachandran, Parameswaran, Leca, Julie, Lemonnier, Francois, Li, Wanda Y., Gams, Miki S., Sakamoto, Takashi, Chu, Mandy, Tobin, Chantal, Laugesen, Eric, Robinson, Troy M., You-Ten, Annick, Butler, Daniel J., Berger, Thorsten, Minden, Mark D., Levine, Ross L., Guidos, Cynthia J., Melnick, Ari M., Mason, Christopher E., Mak, Tak W.
Published in Blood cancer discovery (01.05.2023)
Published in Blood cancer discovery (01.05.2023)
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Journal Article
Genetic and Immunological Evidence for Microbial Transfer Between the International Space Station and an Astronaut
Danko, David C, Singh, Nitin, Butler, Daniel J, Mozsary, Christopher, Jiang, Peng, Keshavarzian, Ali, Maienschein-Cline, Mark, Chlipala, George, Afshinnekoo, Ebrahim, Bezdan, Daniela, Garrett-Bakelman, Francine, Green, Stefan J, Turek, Fred W, Martha Hotz Vitaterna, Venkateswaran, Kasthuri, Mason, Christopher E
Published in bioRxiv (02.12.2020)
Published in bioRxiv (02.12.2020)
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