RecPD: A Recombination-aware measure of phylogenetic diversity
Bundalovic-Torma, Cedoljub, Desveaux, Darrell, Guttman, David S
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide
Isabel, Sandra, Graña-Miraglia, Lucía, Gutierrez, Jahir M., Bundalovic-Torma, Cedoljub, Groves, Helen E., Isabel, Marc R., Eshaghi, AliReza, Patel, Samir N., Gubbay, Jonathan B., Poutanen, Tomi, Guttman, David S., Poutanen, Susan M.
Published in Scientific reports (20.08.2020)
Published in Scientific reports (20.08.2020)
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The effector-triggered immunity landscape of tomato against Pseudomonas syringae
Lonjon, Fabien, Lai, Yan, Askari, Nasrin, Aiyar, Niharikaa, Bundalovic-Torma, Cedoljub, Laflamme, Bradley, Wang, Pauline W., Desveaux, Darrell, Guttman, David S.
Published in Nature communications (14.06.2024)
Published in Nature communications (14.06.2024)
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Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster
Whitfield, Gregory B, Marmont, Lindsey S, Bundalovic-Torma, Cedoljub, Razvi, Erum, Roach, Elyse J, Khursigara, Cezar M, Parkinson, John, Howell, P Lynne
Published in PLoS pathogens (01.04.2020)
Published in PLoS pathogens (01.04.2020)
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Journal Article
Predictive modeling of Pseudomonas syringae virulence on bean using gradient boosted decision trees
Almeida, Renan N. D, Greenberg, Michael, Bundalovic-Torma, Cedoljub, Martel, Alexandre, Wang, Pauline W, Middleton, Maggie A, Chatterton, Syama, Desveaux, Darrell, Guttman, David S
Published in PLoS pathogens (25.07.2022)
Published in PLoS pathogens (25.07.2022)
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Journal Article
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli
Babu, Mohan, Arnold, Roland, Bundalovic-Torma, Cedoljub, Gagarinova, Alla, Wong, Keith S, Kumar, Ashwani, Stewart, Geordie, Samanfar, Bahram, Aoki, Hiroyuki, Wagih, Omar, Vlasblom, James, Phanse, Sadhna, Lad, Krunal, Yeou Hsiung Yu, Angela, Graham, Christopher, Jin, Ke, Brown, Eric, Golshani, Ashkan, Kim, Philip, Moreno-Hagelsieb, Gabriel, Greenblatt, Jack, Houry, Walid A, Parkinson, John, Emili, Andrew
Published in PLoS genetics (01.02.2014)
Published in PLoS genetics (01.02.2014)
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Journal Article
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli
Kumar, Ashwani, Beloglazova, Natalia, Bundalovic-Torma, Cedoljub, Phanse, Sadhna, Deineko, Viktor, Gagarinova, Alla, Musso, Gabriel, Vlasblom, James, Lemak, Sofia, Hooshyar, Mohsen, Minic, Zoran, Wagih, Omar, Mosca, Roberto, Aloy, Patrick, Golshani, Ashkan, Parkinson, John, Emili, Andrew, Yakunin, Alexander F., Babu, Mohan
Published in Cell reports (Cambridge) (26.01.2016)
Published in Cell reports (Cambridge) (26.01.2016)
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Journal Article
Diversity, Evolution, and Function of Pseudomonas syringae Effectoromes
Bundalovic-Torma, Cedoljub, Lonjon, Fabien, Desveaux, Darrell, Guttman, David S
Published in Annual review of phytopathology (26.08.2022)
Published in Annual review of phytopathology (26.08.2022)
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Sa2023 TARGETED AND REPRODUCIBLE SAMPLING OF THE SMALL INTESTINAL MICROBIOME WITH THE SMALL INTESTINE MICROBIOME ASPIRATE CAPSULE TECHNOLOGY (SIMBA): CLINICAL VALIDATION AGAINST ENDOSCOPY ASPIRATES AND FECAL SAMPLES IN HEALTHY AND GI DISORDER
Bundalovic-Torma, Cedoljub, Wang, Gang, Menon, Sharanya, Bruehlmann, Sabina, Wilsack, Lynn, Rehak, Renata, Bagheri, Sahar, Banoei, Mohammad, Lou, Lawrence, Nasser, Yasmin, Woo, Matthew, Lewis, Ian, McCoy, Kathy, Andrews, Christopher N.
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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Journal Article
Global landscape of cell envelope protein complexes in Escherichia coli
Babu, Mohan, Bundalovic-Torma, Cedoljub, Calmettes, Charles, Phanse, Sadhna, Zhang, Qingzhou, Jiang, Yue, Minic, Zoran, Kim, Sunyoung, Mehla, Jitender, Gagarinova, Alla, Rodionova, Irina, Kumar, Ashwani, Guo, Hongbo, Kagan, Olga, Pogoutse, Oxana, Aoki, Hiroyuki, Deineko, Viktor, Caufield, J Harry, Holtzapple, Erik, Zhang, Zhongge, Vastermark, Ake, Pandya, Yogee, Lai, Christine Chieh-lin, El Bakkouri, Majida, Hooda, Yogesh, Shah, Megha, Burnside, Dan, Hooshyar, Mohsen, Vlasblom, James, Rajagopala, Sessandra V, Golshani, Ashkan, Wuchty, Stefan, F Greenblatt, Jack, Saier, Milton, Uetz, Peter, F Moraes, Trevor, Parkinson, John, Emili, Andrew
Published in Nature biotechnology (01.01.2018)
Published in Nature biotechnology (01.01.2018)
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Journal Article
Comparative genomic insights into the epidemiology and virulence of plant pathogenic pseudomonads from Turkey
Dillon, Marcus M, Ruiz-Bedoya, Tatiana, Bundalovic-Torma, Cedoljub, Guttman, Kevin M, Kwak, Haejin, Middleton, Maggie A, Wang, Pauline W, Horuz, Sumer, Aysan, Yesim, Guttman, David S
Published in Microbial genomics (01.07.2021)
Published in Microbial genomics (01.07.2021)
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Journal Article
Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli: e1004120
Babu, Mohan, Arnold, Roland, Bundalovic-Torma, Cedoljub, Gagarinova, Alla, Wong, Keith S, Kumar, Ashwani, Stewart, Geordie, Samanfar, Bahram, Aoki, Hiroyuki, Wagih, Omar, Vlasblom, James, Phanse, Sadhna, Lad, Krunal, Yu, Angela YeouHsiung, Graham, Christopher, Jin, Ke, Brown, Eric, Golshani, Ashkan, Kim, Philip, Moreno-Hagelsieb, Gabriel, Greenblatt, Jack, Houry, Walid A, Parkinson, John, Emili, Andrew
Published in PLoS genetics (01.02.2014)
Published in PLoS genetics (01.02.2014)
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Journal Article
Predictive Modeling of Pseudomonas syringae Virulence on Bean using Gradient Boosted Decision Trees
Almeida, Renan Nd, Greenberg, Michael, Bundalovic-Torma, Cedoljub, Martel, Alexandre, Wang, Pauline W, Middleton, Maggie, Chatterton, Syama, Desveaux, Darrell, Guttman, David S
Published in bioRxiv (05.01.2022)
Published in bioRxiv (05.01.2022)
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Paper
Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster
Whitfield, Gregory B, Marmont, Lindsey S, Bundalovic-Torma, Cedoljub, Razvi, Erum, Roach, Elyse J, Khursigara, Cezar M, Parkinson, John, Howell, P Lynne
Published in bioRxiv (18.09.2019)
Published in bioRxiv (18.09.2019)
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