Transcription factor–DNA binding: beyond binding site motifs
Inukai, Sachi, Kock, Kian Hong, Bulyk, Martha L
Published in Current opinion in genetics & development (01.04.2017)
Published in Current opinion in genetics & development (01.04.2017)
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Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
Gordân, Raluca, Shen, Ning, Dror, Iris, Zhou, Tianyin, Horton, John, Rohs, Remo, Bulyk, Martha L.
Published in Cell reports (Cambridge) (25.04.2013)
Published in Cell reports (Cambridge) (25.04.2013)
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Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch
Liu, Nan, Hargreaves, Victoria V., Zhu, Qian, Kurland, Jesse V., Hong, Jiyoung, Kim, Woojin, Sher, Falak, Macias-Trevino, Claudio, Rogers, Julia M., Kurita, Ryo, Nakamura, Yukio, Yuan, Guo-Cheng, Bauer, Daniel E., Xu, Jian, Bulyk, Martha L., Orkin, Stuart H.
Published in Cell (05.04.2018)
Published in Cell (05.04.2018)
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Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts
Gisselbrecht, Stephen S., Palagi, Alexandre, Kurland, Jesse V., Rogers, Julia M., Ozadam, Hakan, Zhan, Ye, Dekker, Job, Bulyk, Martha L.
Published in Molecular cell (16.01.2020)
Published in Molecular cell (16.01.2020)
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Diversification of Transcription Factor Paralogs via Noncanonical Modularity in C2H2 Zinc Finger DNA Binding
Siggers, Trevor, Reddy, Jessica, Barron, Brian, Bulyk, Martha L.
Published in Molecular cell (21.08.2014)
Published in Molecular cell (21.08.2014)
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The NF-κB Genomic Landscape in Lymphoblastoid B Cells
Zhao, Bo, Barrera, Luis A., Ersing, Ina, Willox, Bradford, Schmidt, Stefanie C.S., Greenfeld, Hannah, Zhou, Hufeng, Mollo, Sarah B., Shi, Tommy T., Takasaki, Kaoru, Jiang, Sizun, Cahir-McFarland, Ellen, Kellis, Manolis, Bulyk, Martha L., Kieff, Elliott, Gewurz, Benjamin E.
Published in Cell reports (Cambridge) (11.09.2014)
Published in Cell reports (Cambridge) (11.09.2014)
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Survey of variation in human transcription factors reveals prevalent DNA binding changes
Barrera, Luis A., Vedenko, Anastasia, Kurland, Jesse V., Rogers, Julia M., Gisselbrecht, Stephen S., Rossin, Elizabeth J., Woodard, Jaie, Mariani, Luca, Kock, Kian Hong, Inukai, Sachi, Siggers, Trevor, Shokri, Leila, Gordân, Raluca, Sahni, Nidhi, Cotsapas, Chris, Hao, Tong, Yi, Song, Kellis, Manolis, Daly, Mark J., Vidal, Marc, Hill, David E., Bulyk, Martha L.
Published in Science (American Association for the Advancement of Science) (25.03.2016)
Published in Science (American Association for the Advancement of Science) (25.03.2016)
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The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain
Weber, Lisa Marie, Jia, Yulin, Stielow, Bastian, Gisselbrecht, Stephen S, Cao, Yinghua, Ren, Yanpeng, Rohner, Iris, King, Jessica, Rothman, Elisabeth, Fischer, Sabrina, Simon, Clara, Forné, Ignasi, Nist, Andrea, Stiewe, Thorsten, Bulyk, Martha L, Wang, Zhanxin, Liefke, Robert
Published in Nucleic acids research (25.01.2023)
Published in Nucleic acids research (25.01.2023)
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Diversity and Complexity in DNA Recognition by Transcription Factors
Badis, Gwenael, Berger, Michael F, Philippakis, Anthony A, Talukder, Shaheynoor, Gehrke, Andrew R, Jaeger, Savina A, Chan, Esther T, Metzler, Genita, Vedenko, Anastasia, Chen, Xiaoyu, Kuznetsov, Hanna, Wang, Chi-Fong, Coburn, David, Newburger, Daniel E, Morris, Quaid, Hughes, Timothy R, Bulyk, Martha L
Published in Science (American Association for the Advancement of Science) (26.06.2009)
Published in Science (American Association for the Advancement of Science) (26.06.2009)
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A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Shokri, Leila, Inukai, Sachi, Hafner, Antonina, Weinand, Kathryn, Hens, Korneel, Vedenko, Anastasia, Gisselbrecht, Stephen S., Dainese, Riccardo, Bischof, Johannes, Furger, Edy, Feuz, Jean-Daniel, Basler, Konrad, Deplancke, Bart, Bulyk, Martha L.
Published in Cell reports (Cambridge) (16.04.2019)
Published in Cell reports (Cambridge) (16.04.2019)
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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo
Wei, Gong-Hong, Badis, Gwenael, Berger, Michael F, Kivioja, Teemu, Palin, Kimmo, Enge, Martin, Bonke, Martin, Jolma, Arttu, Varjosalo, Markku, Gehrke, Andrew R, Yan, Jian, Talukder, Shaheynoor, Turunen, Mikko, Taipale, Mikko, Stunnenberg, Hendrik G, Ukkonen, Esko, Hughes, Timothy R, Bulyk, Martha L, Taipale, Jussi
Published in The EMBO journal (07.07.2010)
Published in The EMBO journal (07.07.2010)
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Lineage-specific control of convergent differentiation by a Forkhead repressor
Mizeracka, Karolina, Rogers, Julia M, Rumley, Jonathan D, Shaham, Shai, Bulyk, Martha L, Murray, John I, Heiman, Maxwell G
Published in Development (Cambridge) (01.10.2021)
Published in Development (Cambridge) (01.10.2021)
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