Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform
Videnska, Petra, Smerkova, Kristyna, Zwinsova, Barbora, Popovici, Vlad, Micenkova, Lenka, Sedlar, Karel, Budinska, Eva
Published in Scientific reports (25.09.2019)
Published in Scientific reports (25.09.2019)
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Journal Article
Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer
Budinska, Eva, Popovici, Vlad, Tejpar, Sabine, D'Ario, Giovanni, Lapique, Nicolas, Sikora, Katarzyna Otylia, Di Narzo, Antonio Fabio, Yan, Pu, Hodgson, John Graeme, Weinrich, Scott, Bosman, Fred, Roth, Arnaud, Delorenzi, Mauro
Published in The Journal of pathology (01.09.2013)
Published in The Journal of pathology (01.09.2013)
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Journal Article
Image-based surrogate biomarkers for molecular subtypes of colorectal cancer
Popovici, Vlad, Budinská, Eva, Dušek, Ladislav, Kozubek, Michal, Bosman, Fred
Published in Bioinformatics (Oxford, England) (01.07.2017)
Published in Bioinformatics (Oxford, England) (01.07.2017)
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Journal Article
Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry
Bouchal, Pavel, Schubert, Olga T., Faktor, Jakub, Capkova, Lenka, Imrichova, Hana, Zoufalova, Karolina, Paralova, Vendula, Hrstka, Roman, Liu, Yansheng, Ebhardt, Holger Alexander, Budinska, Eva, Nenutil, Rudolf, Aebersold, Ruedi
Published in Cell reports (Cambridge) (16.07.2019)
Published in Cell reports (Cambridge) (16.07.2019)
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Journal Article
Identification of a Poor-Prognosis BRAF-Mutant–Like Population of Patients With Colon Cancer
POPOVICI, Vlad, BUDINSKA, Eva, DELORENZI, Mauro, TEJPAR, Sabine, WEINRICH, Scott, ESTRELLA, Heather, HODGSON, Graeme, VAN CUTSEM, Eric, TAO XIE, BOSMAN, Fred T, ROTH, Arnaud D
Published in Journal of clinical oncology (20.04.2012)
Published in Journal of clinical oncology (20.04.2012)
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Journal Article
Impact of intrapartum antibiotic prophylaxis on the oral and fecal bacteriomes of children in the first week of life
Pivrncova, Eliska, Buresova, Lucie, Kotaskova, Iva, Videnska, Petra, Andryskova, Lenka, Piler, Pavel, Janku, Petr, Borek, Ivo, Bohm, Jan, Klanova, Jana, Budinska, Eva, Borilova Linhartova, Petra
Published in Scientific reports (06.08.2024)
Published in Scientific reports (06.08.2024)
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Journal Article
Correction: Enrichment of human nasopharyngeal bacteriome with bacteria from dust after short‑term exposure to indoor environment: a pilot study
Konecna, Eva, Videnska, Petra, Buresova, Lucie, Urik, Milan, Smetanova, Sona, Smatana, Stanislav, Prokes, Roman, Lanickova, Barbara, Budinska, Eva, Klanova, Jana, Linhartova, Petra Borilova
Published in BMC microbiology (09.09.2024)
Published in BMC microbiology (09.09.2024)
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Journal Article
Joint analysis of histopathology image features and gene expression in breast cancer
Popovici, Vlad, Budinská, Eva, Čápková, Lenka, Schwarz, Daniel, Dušek, Ladislav, Feit, Josef, Jaggi, Rolf
Published in BMC bioinformatics (11.05.2016)
Published in BMC bioinformatics (11.05.2016)
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Journal Article
Enrichment of human nasopharyngeal bacteriome with bacteria from dust after short-term exposure to indoor environment: a pilot study
Konecna, Eva, Videnska, Petra, Buresova, Lucie, Urik, Milan, Smetanova, Sona, Smatana, Stanislav, Prokes, Roman, Lanickova, Barbara, Budinska, Eva, Klanova, Jana, Borilova Linhartova, Petra
Published in BMC microbiology (31.07.2023)
Published in BMC microbiology (31.07.2023)
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Journal Article
Circulating T cell subsets are associated with clinical outcome of anti-VEGF-based 1st-line treatment of metastatic colorectal cancer patients: a prospective study with focus on primary tumor sidedness
Bencsikova, Beatrix, Budinska, Eva, Selingerova, Iveta, Pilatova, Katerina, Fedorova, Lenka, Greplova, Kristina, Nenutil, Rudolf, Valik, Dalibor, Obermannova, Radka, Sheard, Michael A, Zdrazilova-Dubska, Lenka
Published in BMC cancer (15.07.2019)
Published in BMC cancer (15.07.2019)
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Journal Article
Profiling Tryptophan Catabolites of Human Gut Microbiota and Acute-Phase Protein Levels in Neonatal Dried Blood Specimens
Aust, Anne-Christine, Benesova, Eliska, Vidova, Veronika, Coufalikova, Katerina, Smetanova, Sona, Borek, Ivo, Janku, Petr, Budinska, Eva, Klanova, Jana, Thon, Vojtech, Spacil, Zdenek
Published in Frontiers in microbiology (27.10.2021)
Published in Frontiers in microbiology (27.10.2021)
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Journal Article
Rgtsp: a generalized top scoring pairs package for class prediction
POPOVICIL, Vlad, BUDINSKA, Eva, DELORENZI, Mauro
Published in Bioinformatics (Oxford, England) (15.06.2011)
Published in Bioinformatics (Oxford, England) (15.06.2011)
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Journal Article
Bullous pemphigoid and internal diseases - A case-control study
Jedlickova, Hana, Hlubinka, Milos, Pavlik, Tomas, Semradova, Vera, Budinska, Eva, Vlasin, Zdenek
Published in EJD. European journal of dermatology (01.01.2010)
Published in EJD. European journal of dermatology (01.01.2010)
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Journal Article
Test of Four Colon Cancer Risk-Scores in Formalin Fixed Paraffin Embedded Microarray Gene Expression Data
DI NARZO, Antonio F, TEJPAR, Sabine, MAO MAO, MARTIN, Eric, SCOTT, Weinrich, BOSMAN, Fred T, ROTH, Arnaud, DELORENZI, Mauro, ROSSI, Simona, PU YAN, POPOVICI, Vlad, WIRAPATI, Pratyaksha, BUDINSKA, Eva, TAO XIE, ESTRELLA, Heather, PAVLICEK, Adam
Published in JNCI : Journal of the National Cancer Institute (01.10.2014)
Published in JNCI : Journal of the National Cancer Institute (01.10.2014)
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Journal Article
Heterogenous mutation spectrum and deregulated cellular pathways in aberrant plasma cells underline molecular pathology of light-chain amyloidosis
Chyra, Zuzana, Sevcikova, Tereza, Vojta, Petr, Puterova, Janka, Brozova, Lucie, Growkova, Katerina, Filipova, Jana, Zatopkova, Martina, Grosicki, Sebastian, Barchnicka, Agnieszka, Jedrzejczak, Wieslaw Wiktor, Waszczuk-Gajda, Anna, Jungova, Alexandra, Mikulasova, Aneta, Hajduch, Marian, Mokrejs, Martin, Pour, Ludek, Stork, Martin, Harvanova, Lubica, Mistrik, Martin, Mikala, Gabor, Robak, Pawel, Czyz, Anna, Debski, Jakub, Usnarska-Zubkiewicz, Lidia, Jurczyszyn, Artur, Stejskal, Lukas, Morgan, Gareth, Kryukov, Fedor, Budinska, Eva, Simicek, Michal, Jelinek, Tomas, Hrdinka, Matous, Hajek, Roman
Published in Haematologica (Roma) (01.02.2021)
Published in Haematologica (Roma) (01.02.2021)
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Journal Article
Vegan Diet Is Associated With Favorable Effects on the Metabolic Performance of Intestinal Microbiota: A Cross-Sectional Multi-Omics Study
Prochazkova, Magdalena, Budinska, Eva, Kuzma, Marek, Pelantova, Helena, Hradecky, Jaromir, Heczkova, Marie, Daskova, Nikola, Bratova, Miriam, Modos, Istvan, Videnska, Petra, Splichalova, Petra, Sowah, Solomon A, Kralova, Maria, Henikova, Marina, Selinger, Eliska, Klima, Krystof, Chalupsky, Karel, Sedlacek, Radislav, Landberg, Rikard, Kühn, Tilman, Gojda, Jan, Cahova, Monika
Published in Frontiers in nutrition (Lausanne) (07.01.2022)
Published in Frontiers in nutrition (Lausanne) (07.01.2022)
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Journal Article
Dynamics of allergy development during the first 5 years of life
Vrbova, Marketa, Dorociakova, Petra, Vyskovsky, Roman, Palkovicova Murinova, Lubica, Ciznar, Peter, Rausova, Katarina, McNabb, Scott J. N., Reichrtova, Eva, Budinska, Eva, Thon, Vojtech
Published in European journal of pediatrics (01.09.2018)
Published in European journal of pediatrics (01.09.2018)
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Journal Article