Reference LINE-1 insertion polymorphisms correlate with Parkinson’s disease progression and differential transcript expression in the PPMI cohort
Fröhlich, Alexander, Pfaff, Abigail L., Bubb, Vivien J., Quinn, John P., Koks, Sulev
Published in Scientific reports (24.08.2023)
Published in Scientific reports (24.08.2023)
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Transcriptomic profiling of cerebrospinal fluid identifies ALS pathway enrichment and RNA biomarkers in MND individuals
Fröhlich, Alexander, Pfaff, Abigail L, Bubb, Vivien J, Quinn, John P, Koks, Sulev
Published in Experimental biology and medicine (Maywood, N.J.) (01.12.2023)
Published in Experimental biology and medicine (Maywood, N.J.) (01.12.2023)
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Genome‐Wide Analysis of Structural Variants in Parkinson Disease
Billingsley, Kimberley J., Ding, Jinhui, Jerez, Pilar Alvarez, Illarionova, Anastasia, Levine, Kristin, Grenn, Francis P., Makarious, Mary B., Moore, Anni, Vitale, Daniel, Reed, Xylena, Hernandez, Dena, Torkamani, Ali, Ryten, Mina, Hardy, John, Chia, Ruth, Scholz, Sonja W., Traynor, Bryan J., Dalgard, Clifton L., Ehrlich, Debra J., Tanaka, Toshiko, Ferrucci, Luigi, Beach, Thomas G., Serrano, Geidy E., Quinn, John P., Bubb, Vivien J., Collins, Ryan L, Zhao, Xuefang, Walker, Mark, Pierce‐Hoffman, Emma, Brand, Harrison, Talkowski, Michael E., Casey, Bradford, Cookson, Mark R, Markham, Androo, Nalls, Mike A., Mahmoud, Medhat, Sedlazeck, Fritz J, Blauwendraat, Cornelis, Gibbs, J. Raphael, Singleton, Andrew B.
Published in Annals of neurology (01.05.2023)
Published in Annals of neurology (01.05.2023)
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A Genome-Wide Screen for the Exonisation of Reference SINE-VNTR-Alus and Their Expression in CNS Tissues of Individuals with Amyotrophic Lateral Sclerosis
Pfaff, Abigail L, Bubb, Vivien J, Quinn, John P, Koks, Sulev
Published in International journal of molecular sciences (01.07.2023)
Published in International journal of molecular sciences (01.07.2023)
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At the dawn of the transcriptomic medicine
Koks, Gea, Pfaff, Abigail L, Bubb, Vivien J, Quinn, John P, Koks, Sulev
Published in Experimental biology and medicine (Maywood, N.J.) (01.02.2021)
Published in Experimental biology and medicine (Maywood, N.J.) (01.02.2021)
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Non-reference genome transposable elements (TEs) have a significant impact on the progression of the Parkinson’s disease
Kõks, Sulev, Pfaff, Abigail L, Singleton, Lewis M, Bubb, Vivien J, Quinn, John P
Published in Experimental biology and medicine (Maywood, N.J.) (01.09.2022)
Published in Experimental biology and medicine (Maywood, N.J.) (01.09.2022)
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Deciphering the role of a SINE-VNTR-Alu retrotransposon polymorphism as a biomarker of Parkinson’s disease progression
Fröhlich, Alexander, Pfaff, Abigail L., Middlehurst, Ben, Hughes, Lauren S., Bubb, Vivien J., Quinn, John P., Koks, Sulev
Published in Scientific reports (13.05.2024)
Published in Scientific reports (13.05.2024)
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Regulation of expression quantitative trait loci by SVA retrotransposons within the major histocompatibility complex
Kulski, Jerzy K, Pfaff, Abigail L, Marney, Luke D, Fröhlich, Alexander, Bubb, Vivien J, Quinn, John P, Koks, Sulev
Published in Experimental biology and medicine (Maywood, N.J.) (01.12.2023)
Published in Experimental biology and medicine (Maywood, N.J.) (01.12.2023)
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An Increased Burden of Highly Active Retrotransposition Competent L1s Is Associated with Parkinson's Disease Risk and Progression in the PPMI Cohort
Pfaff, Abigail L, Bubb, Vivien J, Quinn, John P, Koks, Sulev
Published in International journal of molecular sciences (08.09.2020)
Published in International journal of molecular sciences (08.09.2020)
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Characterisation of the potential function of SVA retrotransposons to modulate gene expression patterns
Savage, Abigail L, Bubb, Vivien J, Breen, Gerome, Quinn, John P
Published in BMC evolutionary biology (21.05.2013)
Published in BMC evolutionary biology (21.05.2013)
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A SINE-VNTR-Alu at the LRIG2 locus is associated with proximal and distal gene expression in CRISPR and population models
Hall, Ashley, Middlehurst, Ben, Cadogan, Max A. M., Reed, Xylena, Billingsley, Kimberley J., Bubb, Vivien J., Quinn, John P.
Published in Scientific reports (08.01.2024)
Published in Scientific reports (08.01.2024)
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CRISPR Deletion of a SVA Retrotransposon Demonstrates Function as a cis -Regulatory Element at the TRPV1/TRPV3 Intergenic Region
Price, Emma, Gianfrancesco, Olympia, Harrison, Patrick T, Frank, Bernhard, Bubb, Vivien J, Quinn, John P
Published in International journal of molecular sciences (15.02.2021)
Published in International journal of molecular sciences (15.02.2021)
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