Full scale structural, mechanical and dynamical properties of HIV-1 liposomes
Bryer, Alexander J, Reddy, Tyler, Lyman, Edward, Perilla, Juan R
Published in PLoS computational biology (18.01.2022)
Published in PLoS computational biology (18.01.2022)
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Journal Article
Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR
Lu, Manman, Russell, Ryan W., Bryer, Alexander J., Quinn, Caitlin M., Hou, Guangjin, Zhang, Huilan, Schwieters, Charles D., Perilla, Juan R., Gronenborn, Angela M., Polenova, Tatyana
Published in Nature structural & molecular biology (01.09.2020)
Published in Nature structural & molecular biology (01.09.2020)
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Journal Article
Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization
Gres, Anna T., Kirby, Karen A., McFadden, William M., Du, Haijuan, Liu, Dandan, Xu, Chaoyi, Bryer, Alexander J., Perilla, Juan R., Shi, Jiong, Aiken, Christopher, Fu, Xiaofeng, Zhang, Peijun, Francis, Ashwanth C., Melikyan, Gregory B., Sarafianos, Stefan G.
Published in Nature communications (12.09.2023)
Published in Nature communications (12.09.2023)
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Journal Article
Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA
Cingolani, Gino, McCauley, Michael, Lobley, Anna, Bryer, Alexander J., Wesolowski, Jordan, Greco, Deanna L., Lokareddy, Ravi K., Ronzone, Erik, Perilla, Juan R., Paumet, Fabienne
Published in Nature communications (21.06.2019)
Published in Nature communications (21.06.2019)
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Journal Article
Curvature of the Retroviral Capsid Assembly Is Modulated by a Molecular Switch
Thames, Tyrone, Bryer, Alexander J, Qiao, Xin, Jeon, Jaekyun, Weed, Ryan, Janicki, Kaylie, Hu, Bingwen, Gor’kov, Peter L, Hung, Ivan, Gan, Zhehong, Perilla, Juan R, Chen, Bo
Published in The journal of physical chemistry letters (19.08.2021)
Published in The journal of physical chemistry letters (19.08.2021)
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Journal Article
Elasticity of the HIV-1 core facilitates nuclear entry and infection
Deshpande, Akshay, Bryer, Alexander J, Andino-Moncada, Jonathan R, Shi, Jiong, Hong, Jun, Torres, Cameron, Harel, Shimon, Francis, Ashwanth C, Perilla, Juan R, Aiken, Christopher, Rousso, Itay
Published in PLoS pathogens (11.09.2024)
Published in PLoS pathogens (11.09.2024)
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Journal Article
Recognition of the TDP-43 nuclear localization signal by importin α1/β
Doll, Steven G, Meshkin, Hamed, Bryer, Alexander J, Li, Fenglin, Ko, Ying-Hui, Lokareddy, Ravi K, Gillilan, Richard E, Gupta, Kushol, Perilla, Juan R, Cingolani, Gino
Published in Cell reports (Cambridge) (28.06.2022)
Published in Cell reports (Cambridge) (28.06.2022)
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Journal Article
High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities
Bryer, Alexander J, Hadden-Perilla, Jodi A, Stone, John E, Perilla, Juan R
Published in Journal of chemical information and modeling (28.10.2019)
Published in Journal of chemical information and modeling (28.10.2019)
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Journal Article
Molecular dynamics of the viral life cycle: progress and prospects
Jones, Peter Eugene, Pérez-Segura, Carolina, Bryer, Alexander J, Perilla, Juan R, Hadden-Perilla, Jodi A
Published in Current opinion in virology (01.10.2021)
Published in Current opinion in virology (01.10.2021)
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Journal Article
Elasticity of the HIV-1 Core Facilitates Nuclear Entry and Infection
Deshpande, Akshay, Bryer, Alexander J, Andino, Jonathan, Shi, Jiong, Hong, Jun, Torres, Cameron, Harel, Shimon, Francis, Ashwanth C, Perilla, Juan R, Aiken, Christopher, Rousso, Itay
Published in bioRxiv (30.09.2023)
Published in bioRxiv (30.09.2023)
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Journal Article
Microtiter binding assays and in silico kinetic mapping reveal binding of TDP-43 nuclear localization signal to importin α is modulated by phosphorylation
Meshkin, Hamed, Bryer, Alexander J., Doll, Steven G., Cingolani, Gino, Perilla, Juan R.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Coronavirus through Delaware’s Computational Microscope
Segura, Carolina Pérez, Katyal, Nidhi, González-Arias, Fabio, Bryer, Alexander J., Perilla, Juan R., Hadden-Perilla, Jodi A.
Published in Delaware journal of public health (01.07.2020)
Published in Delaware journal of public health (01.07.2020)
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Journal Article
Full scale structural, mechanical and dynamical properties of HIV-1 liposomes
Bryer, Alexander J., Reddy, Tyler, Lyman, Edward, Perilla, Juan R., Schlessinger, ed., Avner
Published in PLoS computational biology (18.01.2022)
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Published in PLoS computational biology (18.01.2022)
Journal Article
Deep-learning in-situ classification of HIV-1 virion morphology
Rey, Juan S., Li, Wen, Bryer, Alexander J., Beatson, Hagan, Lantz, Christian, Engelman, Alan, Perilla, Juan R.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
The Pentamer vs Hexamer Assembly of Retroviral Capsid Protein is Controlled by the Flexible Linker
Chen, Bo, Qiao, Xin, Thames, Tyrone, Bryer, Alexander J., Jeon, Jaekyun, Hung, Ivan, Gorkov, Peter, Gan, Zhehong, Perilla, Juan R.
Published in Biophysical journal (12.02.2021)
Published in Biophysical journal (12.02.2021)
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Journal Article
Large scale all-atom molecular dynamics simulations of mutant CA tubes provide insights on cytotoxic T-lymphocyte-mediated HIV-1 restriction
Bryer, Alexander J., Balasubramaniam, Muthukumar, Thapa, Santosh, Davids, Benem-Orom, Xu, Chaoyi, Shi, Jiong, Aiken, Christopher, Pandhare, Jui, Dash, Chandravanu, Perilla, Juan R.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article