Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study
Bryant, Josephine M, BSc, Grogono, Dorothy M, MRCP, Greaves, Daniel, MRCP, Foweraker, Juliet, FRCPath, Roddick, Iain, BSc, Inns, Thomas, MSc, Reacher, Mark, FFPH, Haworth, Charles S, FRCP, Curran, Martin D, PhD, Harris, Simon R, PhD, Peacock, Sharon J, Prof, Parkhill, Julian, Prof, Floto, R Andres, Dr
Published in The Lancet (British edition) (04.05.2013)
Published in The Lancet (British edition) (04.05.2013)
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Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
Bos, Kirsten I, Harkins, Kelly M, Herbig, Alexander, Coscolla, Mireia, Weber, Nico, Comas, Iñaki, Forrest, Stephen A, Bryant, Josephine M, Harris, Simon R, Schuenemann, Verena J, Campbell, Tessa J, Majander, Kerttu, Wilbur, Alicia K, Guichon, Ricardo A, Wolfe Steadman, Dawnie L, Cook, Della Collins, Niemann, Stefan, Behr, Marcel A, Zumarraga, Martin, Bastida, Ricardo, Huson, Daniel, Nieselt, Kay, Young, Douglas, Parkhill, Julian, Buikstra, Jane E, Gagneux, Sebastien, Stone, Anne C, Krause, Johannes
Published in Nature (London) (23.10.2014)
Published in Nature (London) (23.10.2014)
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Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing
Doyle, Ronan M, Burgess, Carrie, Williams, Rachel, Gorton, Rebecca, Booth, Helen, Brown, James, Bryant, Josephine M, Chan, Jackie, Creer, Dean, Holdstock, Jolyon, Kunst, Heinke, Lozewicz, Stefan, Platt, Gareth, Romero, Erika Yara, Speight, Graham, Tiberi, Simon, Abubakar, Ibrahim, Lipman, Marc, McHugh, Timothy D, Breuer, Judith
Published in Journal of clinical microbiology (01.08.2018)
Published in Journal of clinical microbiology (01.08.2018)
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Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples
Brown, Amanda C, Bryant, Josephine M, Einer-Jensen, Katja, Holdstock, Jolyon, Houniet, Darren T, Chan, Jacqueline Z M, Depledge, Daniel P, Nikolayevskyy, Vladyslav, Broda, Agnieszka, Stone, Madeline J, Christiansen, Mette T, Williams, Rachel, McAndrew, Michael B, Tutill, Helena, Brown, Julianne, Melzer, Mark, Rosmarin, Caryn, McHugh, Timothy D, Shorten, Robert J, Drobniewski, Francis, Speight, Graham, Breuer, Judith
Published in Journal of clinical microbiology (01.07.2015)
Published in Journal of clinical microbiology (01.07.2015)
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Journal Article
Dissemination of Mycobacterium abscessus via global transmission networks
Ruis, Christopher, Bryant, Josephine M, Bell, Scott C, Thomson, Rachel, Davidson, Rebecca M, Hasan, Nabeeh A, van Ingen, Jakko, Strong, Michael, Floto, R Andres, Parkhill, Julian
Published in Nature microbiology (01.10.2021)
Published in Nature microbiology (01.10.2021)
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Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus
Houldcroft, Charlotte J, Bryant, Josephine M, Depledge, Daniel P, Margetts, Ben K, Simmonds, Jacob, Nicolaou, Stephanos, Tutill, Helena J, Williams, Rachel, Worth, Austen J J, Marks, Stephen D, Veys, Paul, Whittaker, Elizabeth, Breuer, Judith
Published in Frontiers in microbiology (09.09.2016)
Published in Frontiers in microbiology (09.09.2016)
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Journal Article
Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study
Bryant, Josephine M, Harris, Simon R, Parkhill, Julian, Dawson, Rodney, Diacon, Andreas H, van Helden, Paul, Pym, Alex, Mahayiddin, Aziah A, Chuchottaworn, Charoen, Sanne, Ian M, Louw, Cheryl, Boeree, Martin J, Hoelscher, Michael, McHugh, Timothy D, Bateson, Anna L C, Hunt, Robert D, Mwaigwisya, Solomon, Wright, Laura, Gillespie, Stephen H, Bentley, Stephen D
Published in The lancet respiratory medicine (01.12.2013)
Published in The lancet respiratory medicine (01.12.2013)
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Clinically relevant mutations in the PhoR sensor kinase of host-adapted Mycobacterium abscessus isolates impact response to acidic pH and virulence
Belardinelli, Juan M, Arora, Divya, Avanzi, Charlotte, Wheat, William H, Bryant, Josephine M, Spencer, John S, Blundell, Tom L, Parkhill, Julian, Floto, R Andres, Jackson, Mary
Published in Microbiology spectrum (12.12.2023)
Published in Microbiology spectrum (12.12.2023)
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The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex
Bentley, Stephen D, Comas, Iñaki, Bryant, Josephine M, Walker, Danielle, Smith, Noel H, Harris, Simon R, Thurston, Scott, Gagneux, Sebastien, Wood, Jonathan, Antonio, Martin, Quail, Michael A, Gehre, Florian, Adegbola, Richard A, Parkhill, Julian, de Jong, Bouke C
Published in PLoS neglected tropical diseases (01.02.2012)
Published in PLoS neglected tropical diseases (01.02.2012)
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Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence
Ruis, Christopher, Lindesmith, Lisa C, Mallory, Michael L, Brewer-Jensen, Paul D, Bryant, Josephine M, Costantini, Veronica, Monit, Christopher, Vinjé, Jan, Baric, Ralph S, Goldstein, Richard A, Breuer, Judith
Published in Virus evolution (01.07.2020)
Published in Virus evolution (01.07.2020)
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Atypical at skew in Firmicute genomes results from selection and not from mutation
Charneski, Catherine A, Honti, Frank, Bryant, Josephine M, Hurst, Laurence D, Feil, Edward J
Published in PLoS genetics (01.09.2011)
Published in PLoS genetics (01.09.2011)
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Journal Article
Stepwise pathogenic evolution of Mycobacterium abscessus
Bryant, Josephine M, Brown, Karen P, Burbaud, Sophie, Everall, Isobel, Belardinelli, Juan M, Rodriguez-Rincon, Daniela, Grogono, Dorothy M, Peterson, Chelsea M, Verma, Deepshikha, Evans, Ieuan E, Ruis, Christopher, Weimann, Aaron, Arora, Divya, Malhotra, Sony, Bannerman, Bridget, Passemar, Charlotte, Templeton, Kerra, MacGregor, Gordon, Jiwa, Kasim, Fisher, Andrew J, Blundell, Tom L, Ordway, Diane J, Jackson, Mary, Parkhill, Julian, Floto, R Andres
Published in Science (American Association for the Advancement of Science) (30.04.2021)
Published in Science (American Association for the Advancement of Science) (30.04.2021)
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Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination
Cudini, Juliana, Roy, Sunando, Houldcroft, Charlotte J., Bryant, Josephine M., Depledge, Daniel P., Tutill, Helena, Veys, Paul, Williams, Rachel, Worth, Austen J. J., Tamuri, Asif U., Goldstein, Richard A., Breuer, Judith
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2019)
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Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates
De, Kavita, Belardinelli, Juan M, Pandurangan, Arun Prasad, Ehianeta, Teddy, Lian, Elena, Palčeková, Zuzana, Lam, Ha, Gonzalez-Juarrero, Mercedes, Bryant, Josephine M, Blundell, Tom L, Parkhill, Julian, Floto, R Andres, Lowary, Todd L, Wheat, William H, Jackson, Mary
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2024)
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Evolution and host-specific adaptation of Pseudomonas aeruginosa
Weimann, Aaron, Dinan, Adam M., Ruis, Christopher, Bernut, Audrey, Pont, Stéphane, Brown, Karen, Ryan, Judy, Santos, Lúcia, Ellison, Louise, Ukor, Emem, Pandurangan, Arun P., Krokowski, Sina, Blundell, Tom L., Welch, Martin, Blane, Beth, Judge, Kim, Bousfield, Rachel, Brown, Nicholas, Bryant, Josephine M., Kukavica-Ibrulj, Irena, Rampioni, Giordano, Leoni, Livia, Harrison, Patrick T., Peacock, Sharon J., Thomson, Nicholas R., Gauthier, Jeff, Fothergill, Jo L., Levesque, Roger C., Parkhill, Julian, Floto, R. Andres
Published in Science (American Association for the Advancement of Science) (05.07.2024)
Published in Science (American Association for the Advancement of Science) (05.07.2024)
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Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis
Bryant, Josephine M, Thibault, Virginie C, Smith, David G E, McLuckie, Joyce, Heron, Ian, Sevilla, Iker A, Biet, Franck, Harris, Simon R, Maskell, Duncan J, Bentley, Stephen D, Parkhill, Julian, Stevenson, Karen
Published in BMC genomics (26.01.2016)
Published in BMC genomics (26.01.2016)
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Journal Article
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick
Published in BMC infectious diseases (27.02.2013)
Published in BMC infectious diseases (27.02.2013)
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