VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
Amos, Beatrice, Aurrecoechea, Cristina, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y, Bażant, Wojciech, Belnap, Robert, Blevins, Ann S, Böhme, Ulrike, Brestelli, John, Brunk, Brian P, Caddick, Mark, Callan, Danielle, Campbell, Lahcen, Christensen, Mikkel B, Christophides, George K, Crouch, Kathryn, Davis, Kristina, DeBarry, Jeremy, Doherty, Ryan, Duan, Yikun, Dunn, Michael, Falke, Dave, Fisher, Steve, Flicek, Paul, Fox, Brett, Gajria, Bindu, Giraldo-Calderón, Gloria I, Harb, Omar S, Harper, Elizabeth, Hertz-Fowler, Christiane, Hickman, Mark J, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kwon, Dae Kun, Lamoureux, Kristopher, Lawson, Daniel, Li, Wei, Lies, Kallie, Lodha, Disha, Long, Jamie, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Nabrzyski, Jaroslaw, Roos, David S, Rund, Samuel S C, Schulman, Stephanie Wever, Shanmugasundram, Achchuthan, Sitnik, Vasily, Spruill, Drew, Starns, David, Stoeckert, Christian J, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A, Xu, Lin, Zheng, Jie
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
EuPathDB: the eukaryotic pathogen genomics database resource
Aurrecoechea, Cristina, Barreto, Ana, Basenko, Evelina Y, Brestelli, John, Brunk, Brian P, Cade, Shon, Crouch, Kathryn, Doherty, Ryan, Falke, Dave, Fischer, Steve, Gajria, Bindu, Harb, Omar S, Heiges, Mark, Hertz-Fowler, Christiane, Hu, Sufen, Iodice, John, Kissinger, Jessica C, Lawrence, Cris, Li, Wei, Pinney, Deborah F, Pulman, Jane A, Roos, David S, Shanmugasundram, Achchuthan, Silva-Franco, Fatima, Steinbiss, Sascha, Stoeckert, Jr, Christian J, Spruill, Drew, Wang, Haiming, Warrenfeltz, Susanne, Zheng, Jie
Published in Nucleic Acids Research (04.01.2017)
Published in Nucleic Acids Research (04.01.2017)
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Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
GRANT, Gregory R, FARKAS, Michael H, PIZARRO, Angel D, LAHENS, Nicholas F, SCHUG, Jonathan, BRUNK, Brian P, STOECKERT, Christian J, HOGENESCH, John B, PIERCE, Eric A
Published in Bioinformatics (15.09.2011)
Published in Bioinformatics (15.09.2011)
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Companion: a web server for annotation and analysis of parasite genomes
Steinbiss, Sascha, Silva-Franco, Fatima, Brunk, Brian, Foth, Bernardo, Hertz-Fowler, Christiane, Berriman, Matthew, Otto, Thomas D
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
Lorenzi, Hernan, Khan, Asis, Behnke, Michael S, Namasivayam, Sivaranjani, Swapna, Lakshmipuram S, Hadjithomas, Michalis, Karamycheva, Svetlana, Pinney, Deborah, Brunk, Brian P, Ajioka, James W, Ajzenberg, Daniel, Boothroyd, John C, Boyle, Jon P, Dardé, Marie L, Diaz-Miranda, Maria A, Dubey, Jitender P, Fritz, Heather M, Gennari, Solange M, Gregory, Brian D, Kim, Kami, Saeij, Jeroen P J, Su, Chunlei, White, Michael W, Zhu, Xing-Quan, Howe, Daniel K, Rosenthal, Benjamin M, Grigg, Michael E, Parkinson, John, Liu, Liang, Kissinger, Jessica C, Roos, David S, Sibley, L David
Published in Nature communications (07.01.2016)
Published in Nature communications (07.01.2016)
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Journal Article
FungiDB: an integrated functional genomics database for fungi
Stajich, Jason E., Harris, Todd, Brunk, Brian P., Brestelli, John, Fischer, Steve, Harb, Omar S., Kissinger, Jessica C., Li, Wei, Nayak, Vishal, Pinney, Deborah F., Stoeckert, Chris J., Roos, David S.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Aslett, Martin, Aurrecoechea, Cristina, Berriman, Matthew, Brestelli, John, Brunk, Brian P, Carrington, Mark, Depledge, Daniel P, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gardner, Malcolm J, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Hertz-Fowler, Christiane, Houston, Robin, Innamorato, Frank, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen, Li, Wei, Logan, Flora J, Miller, John A, Mitra, Siddhartha, Myler, Peter J, Nayak, Vishal, Pennington, Cary, Phan, Isabelle, Pinney, Deborah F, Ramasamy, Gowthaman, Rogers, Matthew B, Roos, David S, Ross, Chris, Sivam, Dhileep, Smith, Deborah F, Srinivasamoorthy, Ganesh, Stoeckert, Christian J. Jr, Subramanian, Sandhya, Thibodeau, Ryan, Tivey, Adrian, Treatman, Charles, Velarde, Giles, Wang, Haiming
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
PlasmoDB: a functional genomic database for malaria parasites
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P, Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen, Li, Wei, Miller, John A, Nayak, Vishal, Pennington, Cary, Pinney, Deborah F, Roos, David S, Ross, Chris, Stoeckert, Christian J. Jr, Treatman, Charles, Wang, Haiming
Published in Nucleic acids research (01.01.2009)
Published in Nucleic acids research (01.01.2009)
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Journal Article
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments
Oliveira, Francislon S, Brestelli, John, Cade, Shon, Zheng, Jie, Iodice, John, Fischer, Steve, Aurrecoechea, Cristina, Kissinger, Jessica C, Brunk, Brian P, Stoeckert, Christian J, Fernandes, Gabriel R, Roos, David S, Beiting, Daniel P
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups
Fischer, Steve, Brunk, Brian P, Chen, Feng, Gao, Xin, Harb, Omar S, Iodice, John B, Shanmugam, Dhanasekaran, Roos, David S, Stoeckert, Jr, Christian J
Published in Current protocols in bioinformatics (01.09.2011)
Published in Current protocols in bioinformatics (01.09.2011)
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Journal Article
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy
Reid, Adam James, Vermont, Sarah J, Cotton, James A, Harris, David, Hill-Cawthorne, Grant A, Könen-Waisman, Stephanie, Latham, Sophia M, Mourier, Tobias, Norton, Rebecca, Quail, Michael A, Sanders, Mandy, Shanmugam, Dhanasekaran, Sohal, Amandeep, Wasmuth, James D, Brunk, Brian, Grigg, Michael E, Howard, Jonathan C, Parkinson, John, Roos, David S, Trees, Alexander J, Berriman, Matthew, Pain, Arnab, Wastling, Jonathan M
Published in PLoS pathogens (01.03.2012)
Published in PLoS pathogens (01.03.2012)
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Journal Article
GeneDB-an annotation database for pathogens
Logan-Klumpler, Flora J., De Silva, Nishadi, Boehme, Ulrike, Rogers, Matthew B., Velarde, Giles, McQuillan, Jacqueline A., Carver, Tim, Aslett, Martin, Olsen, Christian, Subramanian, Sandhya, Phan, Isabelle, Farris, Carol, Mitra, Siddhartha, Ramasamy, Gowthaman, Wang, Haiming, Tivey, Adrian, Jackson, Andrew, Houston, Robin, Parkhill, Julian, Holden, Matthew, Harb, Omar S., Brunk, Brian P., Myler, Peter J., Roos, David, Carrington, Mark, Smith, Deborah F., Hertz-Fowler, Christiane, Berriman, Matthew
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
ToxoDB: an integrated Toxoplasma gondii database resource
Gajria, Bindu, Bahl, Amit, Brestelli, John, Dommer, Jennifer, Fischer, Steve, Gao, Xin, Heiges, Mark, Iodice, John, Kissinger, Jessica C, Mackey, Aaron J, Pinney, Deborah F, Roos, David S, Stoeckert, Christian J. Jr, Wang, Haiming, Brunk, Brian P
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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Journal Article
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
Xia, Dong, Sanderson, Sanya J, Jones, Andrew R, Prieto, Judith H, Yates, John R, Bromley, Elizabeth, Tomley, Fiona M, Lal, Kalpana, Sinden, Robert E, Brunk, Brian P, Roos, David S, Wastling, Jonathan M
Published in Genome biology (01.01.2008)
Published in Genome biology (01.01.2008)
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Journal Article
EuPathDB: a portal to eukaryotic pathogen databases
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen T, Li, Wei, Miller, John A, Nayak, Vishal, Pennington, Cary, Pinney, Deborah F, Roos, David S, Ross, Chris, Srinivasamoorthy, Ganesh, Stoeckert, Christian J. Jr, Thibodeau, Ryan, Treatman, Charles, Wang, Haiming
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
EuPathDB: the eukaryotic pathogen database
Aurrecoechea, Cristina, Barreto, Ana, Brestelli, John, Brunk, Brian P, Cade, Shon, Doherty, Ryan, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Hu, Sufen, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen T, Li, Wei, Pinney, Deborah F, Pitts, Brian, Roos, David S, Srinivasamoorthy, Ganesh, Stoeckert, Jr, Christian J, Wang, Haiming, Warrenfeltz, Susanne
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S., Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C., Kraemer, Eileen, Li, Wei, Miller, John A., Morrison, Hilary G., Nayak, Vishal, Pennington, Cary, Pinney, Deborah F., Roos, David S., Ross, Chris, Stoeckert, Christian J., Sullivan, Steven, Treatman, Charles, Wang, Haiming
Published in Nucleic acids research (01.01.2009)
Published in Nucleic acids research (01.01.2009)
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Journal Article
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum
Krishna, Ritesh, Xia, Dong, Sanderson, Sanya, Shanmugasundram, Achchuthan, Vermont, Sarah, Bernal, Axel, Daniel-Naguib, Gianluca, Ghali, Fawaz, Brunk, Brian P., Roos, David S., Wastling, Jonathan M., Jones, Andrew R.
Published in Proteomics (Weinheim) (01.08.2015)
Published in Proteomics (Weinheim) (01.08.2015)
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Journal Article
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species
Aurrecoechea, Cristina, Barreto, Ana, Brestelli, John, Brunk, Brian P, Caler, Elisabet V, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S, Heiges, Mark, Iodice, John, Kissinger, Jessica C, Kraemer, Eileen T, Li, Wei, Nayak, Vishal, Pennington, Cary, Pinney, Deborah F, Pitts, Brian, Roos, David S, Srinivasamoorthy, Ganesh, Stoeckert, Christian J. Jr, Treatman, Charles, Wang, Haiming
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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