Suboptimal Biological Sampling as a Probable Cause of False-Negative COVID-19 Diagnostic Test Results
Kinloch, Natalie N, Ritchie, Gordon, Brumme, Chanson J, Dong, Winnie, Dong, Weiyan, Lawson, Tanya, Jones, R Brad, Montaner, Julio S G, Leung, Victor, Romney, Marc G, Stefanovic, Aleksandra, Matic, Nancy, Lowe, Christopher F, Brumme, Zabrina L
Published in The Journal of infectious diseases (17.08.2020)
Published in The Journal of infectious diseases (17.08.2020)
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Rapid Detection of SARS-CoV-2 Variants of Concern, Including B.1.1.28/P.1, British Columbia, Canada
Matic, Nancy, Lowe, Christopher F, Ritchie, Gordon, Stefanovic, Aleksandra, Lawson, Tanya, Jang, Willson, Young, Matthew, Dong, Winnie, Brumme, Zabrina L, Brumme, Chanson J, Leung, Victor, Romney, Marc G
Published in Emerging infectious diseases (01.06.2021)
Published in Emerging infectious diseases (01.06.2021)
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Variation in HIV-1 Nef function within and among viral subtypes reveals genetically separable antagonism of SERINC3 and SERINC5
Jin, Steven W, Mwimanzi, Francis M, Mann, Jaclyn K, Bwana, Mwebesa Bosco, Lee, Guinevere Q, Brumme, Chanson J, Hunt, Peter W, Martin, Jeff N, Bangsberg, David R, Ndung'u, Thumbi, Brumme, Zabrina L, Brockman, Mark A
Published in PLoS pathogens (14.09.2020)
Published in PLoS pathogens (14.09.2020)
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Influence of HLA-C Expression Level on HIV Control
Apps, Richard, Qi, Ying, Carlson, Jonathan M., Chen, Haoyan, Gao, Xiaojiang, Thomas, Rasmi, Yuki, Yuko, Del Prete, Greg Q., Goulder, Philip, Brumme, Zabrina L., Brumme, Chanson J., John, Mina, Mallal, Simon, Nelson, George, Bosch, Ronald, Heckerman, David, Stein, Judy L., Soderberg, Kelly A., Moody, M. Anthony, Denny, Thomas N., Zeng, Xue, Fang, Jingyuan, Moffett, Ashley, Lifson, Jeffrey D., Goedert, James J., Buchbinder, Susan, Kirk, Gregory D., Fellay, Jacques, McLaren, Paul, Deeks, Steven G., Pereyra, Florencia, Walker, Bruce, Michael, Nelson L., Weintrob, Amy, Wolinsky, Steven, Liao, Wilson, Carrington, Mary
Published in Science (American Association for the Advancement of Science) (05.04.2013)
Published in Science (American Association for the Advancement of Science) (05.04.2013)
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Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity
Feder, Alison F, Harper, Kristin N, Brumme, Chanson J, Pennings, Pleuni S
Published in eLife (02.09.2021)
Published in eLife (02.09.2021)
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Journal Article
Reduced Magnitude and Durability of Humoral Immune Responses to COVID-19 mRNA Vaccines Among Older Adults
Brockman, Mark A, Mwimanzi, Francis, Lapointe, Hope R, Sang, Yurou, Agafitei, Olga, Cheung, Peter K, Ennis, Siobhan, Ng, Kurtis, Basra, Simran, Lim, Li Yi, Yaseen, Fatima, Young, Landon, Umviligihozo, Gisele, Omondi, F Harrison, Kalikawe, Rebecca, Burns, Laura, Brumme, Chanson J, Leung, Victor, Montaner, Julio S G, Holmes, Daniel, DeMarco, Mari L, Simons, Janet, Pantophlet, Ralph, Niikura, Masahiro, Romney, Marc G, Brumme, Zabrina L
Published in The Journal of infectious diseases (01.04.2022)
Published in The Journal of infectious diseases (01.04.2022)
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Journal Article
HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA)
Kinloch, Natalie N, Ren, Yanqin, Conce Alberto, Winiffer D, Dong, Winnie, Khadka, Pragya, Huang, Szu Han, Mota, Talia M, Wilson, Andrew, Shahid, Aniqa, Kirkby, Don, Harris, Marianne, Kovacs, Colin, Benko, Erika, Ostrowski, Mario A, Del Rio Estrada, Perla M, Wimpelberg, Avery, Cannon, Christopher, Hardy, W David, MacLaren, Lynsay, Goldstein, Harris, Brumme, Chanson J, Lee, Guinevere Q, Lynch, Rebecca M, Brumme, Zabrina L, Jones, R Brad
Published in Nature communications (08.01.2021)
Published in Nature communications (08.01.2021)
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Journal Article
T-cell responses to sequentially emerging viral escape mutants shape long-term HIV-1 population dynamics
Akahoshi, Tomohiro, Gatanaga, Hiroyuki, Kuse, Nozomi, Chikata, Takayuki, Koyanagi, Madoka, Ishizuka, Naoki, Brumme, Chanson J, Murakoshi, Hayato, Brumme, Zabrina L, Oka, Shinichi, Takiguchi, Masafumi
Published in PLoS pathogens (28.12.2020)
Published in PLoS pathogens (28.12.2020)
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SARS-CoV-2 live virus neutralization after four COVID-19 vaccine doses in people with HIV receiving suppressive antiretroviral therapy
Cheung, Peter K, Lapointe, Hope R, Sang, Yurou, Ennis, Siobhan, Mwimanzi, Francis, Speckmaier, Sarah, Barad, Evan, Dong, Winnie, Liang, Richard, Simons, Janet, Lowe, Christopher F, Romney, Marc G, Brumme, Chanson J, Niikura, Masahiro, Brockman, Mark A, Brumme, Zabrina L
Published in AIDS (London) (01.04.2023)
Published in AIDS (London) (01.04.2023)
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Journal Article
Older Adults Mount Less Durable Humoral Responses to Two Doses of COVID-19 mRNA Vaccine but Strong Initial Responses to a Third Dose
Mwimanzi, Francis, Lapointe, Hope R, Cheung, Peter K, Sang, Yurou, Yaseen, Fatima, Umviligihozo, Gisele, Kalikawe, Rebecca, Datwani, Sneha, Omondi, F Harrison, Burns, Laura, Young, Landon, Leung, Victor, Agafitei, Olga, Ennis, Siobhan, Dong, Winnie, Basra, Simran, Lim, Li Yi, Ng, Kurtis, Pantophlet, Ralph, Brumme, Chanson J, Montaner, Julio S G, Prystajecky, Natalie, Lowe, Christopher F, DeMarco, Mari L, Holmes, Daniel T, Simons, Janet, Niikura, Masahiro, Romney, Marc G, Brumme, Zabrina L, Brockman, Mark A
Published in The Journal of infectious diseases (21.09.2022)
Published in The Journal of infectious diseases (21.09.2022)
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Journal Article
HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
Brumme, Zabrina L, John, Mina, Carlson, Jonathan M, Brumme, Chanson J, Chan, Dennison, Brockman, Mark A, Swenson, Luke C, Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M, Frahm, Nicole, Brander, Christian, Haas, David W, Riddler, Sharon A, Haubrich, Richard, Walker, Bruce D, Harrigan, P Richard, Heckerman, David, Mallal, Simon
Published in PloS one (19.08.2009)
Published in PloS one (19.08.2009)
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Antigen load and viral sequence diversification determine the functional profile of HIV-1-specific CD8+ T cells
Streeck, Hendrik, Brumme, Zabrina L, Anastario, Michael, Cohen, Kristin W, Jolin, Jonathan S, Meier, Angela, Brumme, Chanson J, Rosenberg, Eric S, Alter, Galit, Allen, Todd M, Walker, Bruce D, Altfeld, Marcus
Published in PLoS medicine (01.05.2008)
Published in PLoS medicine (01.05.2008)
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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
Henn, Matthew R, Boutwell, Christian L, Charlebois, Patrick, Lennon, Niall J, Power, Karen A, Macalalad, Alexander R, Berlin, Aaron M, Malboeuf, Christine M, Ryan, Elizabeth M, Gnerre, Sante, Zody, Michael C, Erlich, Rachel L, Green, Lisa M, Berical, Andrew, Wang, Yaoyu, Casali, Monica, Streeck, Hendrik, Bloom, Allyson K, Dudek, Tim, Tully, Damien, Newman, Ruchi, Axten, Karen L, Gladden, Adrianne D, Battis, Laura, Kemper, Michael, Zeng, Qiandong, Shea, Terrance P, Gujja, Sharvari, Zedlack, Carmen, Gasser, Olivier, Brander, Christian, Hess, Christoph, Günthard, Huldrych F, Brumme, Zabrina L, Brumme, Chanson J, Bazner, Suzane, Rychert, Jenna, Tinsley, Jake P, Mayer, Ken H, Rosenberg, Eric, Pereyra, Florencia, Levin, Joshua Z, Young, Sarah K, Jessen, Heiko, Altfeld, Marcus, Birren, Bruce W, Walker, Bruce D, Allen, Todd M
Published in PLoS pathogens (01.03.2012)
Published in PLoS pathogens (01.03.2012)
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HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy
Shahid, Aniqa, Jones, Bradley R, Yang, Julia S. W, Dong, Winnie, Shaipanich, Tawimas, Donohoe, Kathryn, Brumme, Chanson J, Joy, Jeffrey B, Leung, Janice M, Brumme, Zabrina L
Published in PLoS pathogens (04.11.2022)
Published in PLoS pathogens (04.11.2022)
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Journal Article
Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool
WOODS, Conan K, BRUMME, Chanson J, LIU, Tommy F, CHUI, Celia K. S, CHU, Anna L, WYNHOVEN, Brian, HALL, Tom A, TREVINO, Christina, SHAFER, Robert W, HARRIGAN, P. Richard
Published in Journal of Clinical Microbiology (01.06.2012)
Published in Journal of Clinical Microbiology (01.06.2012)
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People With Human Immunodeficiency Virus Receiving Suppressive Antiretroviral Therapy Show Typical Antibody Durability After Dual Coronavirus Disease 2019 Vaccination and Strong Third Dose Responses
Lapointe, Hope R, Mwimanzi, Francis, Cheung, Peter K, Sang, Yurou, Yaseen, Fatima, Umviligihozo, Gisele, Kalikawe, Rebecca, Speckmaier, Sarah, Moran-Garcia, Nadia, Datwani, Sneha, Duncan, Maggie C, Agafitei, Olga, Ennis, Siobhan, Young, Landon, Ali, Hesham, Ganase, Bruce, Omondi, F Harrison, Dong, Winnie, Toy, Junine, Sereda, Paul, Burns, Laura, Costiniuk, Cecilia T, Cooper, Curtis, Anis, Aslam H, Leung, Victor, Holmes, Daniel T, DeMarco, Mari L, Simons, Janet, Hedgcock, Malcolm, Prystajecky, Natalie, Lowe, Christopher F, Pantophlet, Ralph, Romney, Marc G, Barrios, Rolando, Guillemi, Silvia, Brumme, Chanson J, Montaner, Julio S G, Hull, Mark, Harris, Marianne, Niikura, Masahiro, Brockman, Mark A, Brumme, Zabrina L
Published in The Journal of infectious diseases (12.04.2023)
Published in The Journal of infectious diseases (12.04.2023)
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The Impact of Clinical, Demographic and Risk Factors on Rates of HIV Transmission: A Population-based Phylogenetic Analysis in British Columbia, Canada
Poon, Art F. Y., Joy, Jeffrey B., Woods, Conan K., Shurgold, Susan, Colley, Guillaume, Brumme, Chanson J., Hogg, Robert S., Montaner, Julio S. G., Harrigan, P. Richard
Published in The Journal of infectious diseases (15.03.2015)
Published in The Journal of infectious diseases (15.03.2015)
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Journal Article
Serial infection with SARS-CoV-2 Omicron BA.1 and BA.2 following three-dose COVID-19 vaccination
Lapointe, Hope R., Mwimanzi, Francis, Cheung, Peter K., Sang, Yurou, Yaseen, Fatima, Kalikawe, Rebecca, Datwani, Sneha, Waterworth, Rachel, Umviligihozo, Gisele, Ennis, Siobhan, Young, Landon, Dong, Winnie, Kirkby, Don, Burns, Laura, Leung, Victor, Holmes, Daniel T., DeMarco, Mari L., Simons, Janet, Matic, Nancy, Montaner, Julio S.G., Brumme, Chanson J., Prystajecky, Natalie, Niikura, Masahiro, Lowe, Christopher F., Romney, Marc G., Brockman, Mark A., Brumme, Zabrina L.
Published in Frontiers in immunology (06.09.2022)
Published in Frontiers in immunology (06.09.2022)
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A Pharmacokinetic Dose-Optimization Study of Cabotegravir and Bictegravir in a Mouse Pregnancy Model
Mohan, Haneesha, Atkinson, Kieran, Watson, Birgit, Brumme, Chanson J, Serghides, Lena
Published in Pharmaceutics (24.08.2022)
Published in Pharmaceutics (24.08.2022)
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