Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain
Vermunt, Marit W., Reinink, Peter, Korving, Jeroen, de Bruijn, Ewart, Creyghton, Paul M., Basak, Onur, Geeven, Geert, Toonen, Pim W., Lansu, Nico, Meunier, Charles, van Heesch, Sebastiaan, Clevers, Hans, de Laat, Wouter, Cuppen, Edwin, Creyghton, Menno P.
Published in Cell reports (Cambridge) (23.10.2014)
Published in Cell reports (Cambridge) (23.10.2014)
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Journal Article
Small RNA expression and strain specificity in the rat
Linsen, Sam E V, de Wit, Elzo, de Bruijn, Ewart, Cuppen, Edwin
Published in BMC genomics (19.04.2010)
Published in BMC genomics (19.04.2010)
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Journal Article
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
Cretu Stancu, Mircea, van Roosmalen, Markus J, Renkens, Ivo, Nieboer, Marleen M, Middelkamp, Sjors, de Ligt, Joep, Pregno, Giulia, Giachino, Daniela, Mandrile, Giorgia, Espejo Valle-Inclan, Jose, Korzelius, Jerome, de Bruijn, Ewart, Cuppen, Edwin, Talkowski, Michael E, Marschall, Tobias, de Ridder, Jeroen, Kloosterman, Wigard P
Published in Nature communications (06.11.2017)
Published in Nature communications (06.11.2017)
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Journal Article
High-Throughput Target-Selected Gene Inactivation in Zebrafish
Kettleborough, Ross N.W., Bruijn, Ewart de, Eeden, Freek van, Cuppen, Edwin, Stemple, Derek L.
Published in Methods in Cell Biology (2011)
Published in Methods in Cell Biology (2011)
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Book Chapter
Journal Article
A systematic genome-wide analysis of zebrafish protein-coding gene function
Kettleborough, Ross N W, Busch-Nentwich, Elisabeth M, Harvey, Steven A, Dooley, Christopher M, de Bruijn, Ewart, van Eeden, Freek, Sealy, Ian, White, Richard J, Herd, Colin, Nijman, Isaac J, Fényes, Fruzsina, Mehroke, Selina, Scahill, Catherine, Gibbons, Richard, Wali, Neha, Carruthers, Samantha, Hall, Amanda, Yen, Jennifer, Cuppen, Edwin, Stemple, Derek L
Published in Nature (London) (25.04.2013)
Published in Nature (London) (25.04.2013)
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Journal Article
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots
Santuari, Luca, Sanchez-Perez, Gabino F., Luijten, Marijn, Rutjens, Bas, Terpstra, Inez, Berke, Lidija, Gorte, Maartje, Prasad, Kalika, Bao, Dongping, Timmermans-Hereijgers, Johanna L.P.M., Maeo, Kenichiro, Nakamura, Kenzo, Shimotohno, Akie, Pencik, Ales, Novak, Ondrej, Ljung, Karin, van Heesch, Sebastiaan, de Bruijn, Ewart, Cuppen, Edwin, Willemsen, Viola, Mähönen, Ari Pekka, Lukowitz, Wolfgang, Snel, Berend, de Ridder, Dick, Scheres, Ben, Heidstra, Renze
Published in The Plant cell (01.12.2016)
Published in The Plant cell (01.12.2016)
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Journal Article
Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline
KLOOSTERMAN, Wigard P, GURYEV, Victor, CUPPEN, Edwin, VAN ROOSMALEN, Mark, DURAN, Karen J, DE BRUIJN, Ewart, BAKKER, Saskia C. M, LETTEBOER, Tom, VAN NESSELROOIJ, Bernadette, HOCHSTENBACH, Ron, POOT, Martin
Published in Human molecular genetics (15.05.2011)
Published in Human molecular genetics (15.05.2011)
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Journal Article
Epigenomic annotation of gene regulatory alterations during evolution of the primate brain
Vermunt, Marit W, Tan, Sander C, Castelijns, Bas, Geeven, Geert, Reinink, Peter, de Bruijn, Ewart, Kondova, Ivanela, Persengiev, Stephan, Bontrop, Ronald, Cuppen, Edwin, de Laat, Wouter, Creyghton, Menno P
Published in Nature neuroscience (01.03.2016)
Published in Nature neuroscience (01.03.2016)
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Journal Article
In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes
Plasterk, Ronald H A, Kloosterman, Wigard P, Wienholds, Erno, de Bruijn, Ewart, Kauppinen, Sakari
Published in Nature methods (01.01.2006)
Published in Nature methods (01.01.2006)
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Journal Article
Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes
van Heesch, Sebastiaan, van Iterson, Maarten, Jacobi, Jetse, Boymans, Sander, Essers, Paul B, de Bruijn, Ewart, Hao, Wensi, MacInnes, Alyson W, Cuppen, Edwin, Simonis, Marieke
Published in Genome biology (07.01.2014)
Published in Genome biology (07.01.2014)
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Journal Article
Feasibility of whole‐genome sequencing‐based tumor diagnostics in routine pathology practice
Samsom, Kris G, Schipper, Luuk J, Roepman, Paul, Bosch, Linda JW, Lalezari, Ferry, Klompenhouwer, Elisabeth G, Langen, Adrianus J, Buffart, Tineke E, Riethorst, Immy, Schoenmaker, Lieke, Schout, Daoin, Noort, Vincent, Berg, Jose G, Bruijn, Ewart, Hoeven, Jacobus JM, Snellenberg, Hans, Kolk, Lizet E, Cuppen, Edwin, Voest, Emile E, Meijer, Gerrit A, Monkhorst, Kim
Published in The Journal of pathology (01.10.2022)
Published in The Journal of pathology (01.10.2022)
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Journal Article
MicroRNA Expression in Zebrafish Embryonic Development
Wienholds, Erno, Kloosterman, Wigard P, Miska, Eric, Alvarez-Saavedra, Ezequiel, Berezikov, Eugene, de Bruijn, Ewart, Horvitz, H. Robert, Kauppinen, Sakari, Plasterk, Ronald H. A
Published in Science (American Association for the Advancement of Science) (08.07.2005)
Published in Science (American Association for the Advancement of Science) (08.07.2005)
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Journal Article
Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing
Harakalova, Magdalena, Mokry, Michal, Hrdlickova, Barbara, Renkens, Ivo, Duran, Karen, van Roekel, Henk, Lansu, Nico, van Roosmalen, Mark, de Bruijn, Ewart, Nijman, Isaac J, Kloosterman, Wigard P, Cuppen, Edwin
Published in Nature protocols (01.12.2011)
Published in Nature protocols (01.12.2011)
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Journal Article
Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries
Mokry, Michal, Feitsma, Harma, Nijman, Isaac J, de Bruijn, Ewart, van der Zaag, Pieter J, Guryev, Victor, Cuppen, Edwin
Published in Nucleic acids research (01.06.2010)
Published in Nucleic acids research (01.06.2010)
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Journal Article
Study protocol: Whole genome sequencing Implementation in standard Diagnostics for Every cancer patient (WIDE)
Samsom, Kris G, Bosch, Linda J W, Schipper, Luuk J, Roepman, Paul, de Bruijn, Ewart, Hoes, Louisa R, Riethorst, Immy, Schoenmaker, Lieke, van der Kolk, Lizet E, Retèl, Valesca P, Frederix, Geert W J, Buffart, Tineke E, van der Hoeven, Jacobus J M, Voest, Emile E, Cuppen, Edwin, Monkhorst, Kim, Meijer, Gerrit A
Published in BMC medical genomics (10.11.2020)
Published in BMC medical genomics (10.11.2020)
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Journal Article
Systematic biases in DNA copy number originate from isolation procedures
van Heesch, Sebastiaan, Mokry, Michal, Boskova, Veronika, Junker, Wade, Mehon, Rajdeep, Toonen, Pim, de Bruijn, Ewart, Shull, James D, Aitman, Timothy J, Cuppen, Edwin, Guryev, Victor
Published in Genome biology (24.04.2013)
Published in Genome biology (24.04.2013)
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Journal Article
Cloning and expression of new microRNAs from zebrafish
Kloosterman, Wigard P., Steiner, Florian A., Berezikov, Eugene, de Bruijn, Ewart, van de Belt, Jose, Verheul, Mark, Cuppen, Edwin, Plasterk, Ronald H.A.
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
Efficient double fragmentation ChIP-seq provides nucleotide resolution protein-DNA binding profiles
Mokry, Michal, Hatzis, Pantelis, de Bruijn, Ewart, Koster, Jan, Versteeg, Rogier, Schuijers, Jurian, van de Wetering, Marc, Guryev, Victor, Clevers, Hans, Cuppen, Edwin
Published in PloS one (30.11.2010)
Published in PloS one (30.11.2010)
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Journal Article
A multi-platform reference for somatic structural variation detection
Espejo Valle-Inclan, Jose, Besselink, Nicolle J.M., de Bruijn, Ewart, Cameron, Daniel L., Ebler, Jana, Kutzera, Joachim, van Lieshout, Stef, Marschall, Tobias, Nelen, Marcel, Priestley, Peter, Renkens, Ivo, Roemer, Margaretha G.M., van Roosmalen, Markus J., Wenger, Aaron M., Ylstra, Bauke, Fijneman, Remond J.A., Kloosterman, Wigard P., Cuppen, Edwin
Published in Cell genomics (08.06.2022)
Published in Cell genomics (08.06.2022)
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Journal Article