Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations
Williams, Zev, Ben-Dov, Iddo Z., Elias, Rony, Mihailovic, Aleksandra, Brown, Miguel, Rosenwaks, Zev, Tuschl, Thomas
Published in Proceedings of the National Academy of Sciences - PNAS (12.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (12.03.2013)
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Journal Article
Integrated molecular subtyping defines a curable oligometastatic state in colorectal liver metastasis
Pitroda, Sean P., Khodarev, Nikolai N., Huang, Lei, Uppal, Abhineet, Wightman, Sean C., Ganai, Sabha, Joseph, Nora, Pitt, Jason, Brown, Miguel, Forde, Martin, Mangold, Kathy, Xue, Lai, Weber, Christopher, Segal, Jeremy P., Kadri, Sabah, Stack, Melinda E., Khan, Sajid, Paty, Philip, Kaul, Karen, Andrade, Jorge, White, Kevin P., Talamonti, Mark, Posner, Mitchell C., Hellman, Samuel, Weichselbaum, Ralph R.
Published in Nature communications (04.05.2018)
Published in Nature communications (04.05.2018)
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Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers
Akat, Kemal Marc, Moore-McGriff, D'Vesharronne, Morozov, Pavel, Brown, Miguel, Gogakos, Tasos, Da Rosa, Joel Correa, Mihailovic, Aleksandra, Sauer, Markus, Ji, Ruiping, Ramarathnam, Aarthi, Totary-Jain, Hana, Williams, Zev, Tuschl, Thomas, Schulze, P. Christian
Published in Proceedings of the National Academy of Sciences - PNAS (29.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (29.07.2014)
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Journal Article
RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries
Hafner, Markus, Renwick, Neil, Brown, Miguel, Mihailović, Aleksandra, Holoch, Daniel, Lin, Carolina, Pena, John T G, Nusbaum, Jeffrey D, Morozov, Pavel, Ludwig, Janos, Ojo, Tolulope, Luo, Shujun, Schroth, Gary, Tuschl, Thomas
Published in RNA (Cambridge) (01.09.2011)
Published in RNA (Cambridge) (01.09.2011)
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Journal Article
Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition
Hafner, Markus, Max, Klaas E A, Bandaru, Pradeep, Morozov, Pavel, Gerstberger, Stefanie, Brown, Miguel, Molina, Henrik, Tuschl, Thomas
Published in RNA (Cambridge) (01.05.2013)
Published in RNA (Cambridge) (01.05.2013)
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Journal Article
Human CLP1 Mutations Alter tRNA Biogenesis, Affecting Both Peripheral and Central Nervous System Function
Karaca, Ender, Weitzer, Stefan, Pehlivan, Davut, Shiraishi, Hiroshi, Gogakos, Tasos, Hanada, Toshikatsu, Jhangiani, Shalini N., Wiszniewski, Wojciech, Withers, Marjorie, Campbell, Ian M., Erdin, Serkan, Isikay, Sedat, Franco, Luis M., Gonzaga-Jauregui, Claudia, Gambin, Tomasz, Gelowani, Violet, Hunter, Jill V., Yesil, Gozde, Koparir, Erkan, Yilmaz, Sarenur, Brown, Miguel, Briskin, Daniel, Hafner, Markus, Morozov, Pavel, Farazi, Thalia A., Bernreuther, Christian, Glatzel, Markus, Trattnig, Siegfried, Friske, Joachim, Kronnerwetter, Claudia, Bainbridge, Matthew N., Gezdirici, Alper, Seven, Mehmet, Muzny, Donna M., Boerwinkle, Eric, Ozen, Mustafa, Clausen, Tim, Tuschl, Thomas, Yuksel, Adnan, Hess, Andreas, Gibbs, Richard A., Martinez, Javier, Penninger, Josef M., Lupski, James R.
Published in Cell (24.04.2014)
Published in Cell (24.04.2014)
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AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification
Kim, Jung, Naqvi, Ammar S, Corbett, Ryan J, Kaufman, Rebecca S, Vaksman, Zalman, Brown, Miguel A, Miller, Daniel P, Phul, Saksham, Geng, Zhuangzhuang, Storm, Phillip B, Resnick, Adam C, Stewart, Douglas R, Rokita, Jo Lynne, Diskin, Sharon J
Published in Bioinformatics (Oxford, England) (04.03.2024)
Published in Bioinformatics (Oxford, England) (04.03.2024)
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MicroRNA Sequence and Expression Analysis in Breast Tumors by Deep Sequencing
FARAZI, Thalia A, HORLINGS, Hugo M, KREIKE, Bas, SIE, Daoud, HOVESTADT, Volker, WESSELS, Lodewyk F. A, VAN DE VIJVER, Marc J, TUSCHL, Thomas, TEN HOEVE, Jelle J, MIHAILOVIC, Aleksandra, HALFWERK, Hans, MOROZOV, Pavel, BROWN, Miguel, HAFNER, Markus, REYAL, Fabien, VAN KOUWENHOVE, Marieke
Published in Cancer research (Chicago, Ill.) (01.07.2011)
Published in Cancer research (Chicago, Ill.) (01.07.2011)
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annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
Gaonkar, Krutika S, Marini, Federico, Rathi, Komal S, Jain, Payal, Zhu, Yuankun, Chimicles, Nicholas A, Brown, Miguel A, Naqvi, Ammar S, Zhang, Bo, Storm, Phillip B, Maris, John M, Raman, Pichai, Resnick, Adam C, Strauch, Konstantin, Taroni, Jaclyn N, Rokita, Jo Lynne
Published in BMC bioinformatics (14.12.2020)
Published in BMC bioinformatics (14.12.2020)
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A proteogenomic surfaceome study identifies DLK1 as an immunotherapeutic target in neuroblastoma
Hamilton, Amber K., Radaoui, Alexander B., Tsang, Matthew, Martinez, Daniel, Conkrite, Karina L., Patel, Khushbu, Sidoli, Simone, Delaidelli, Alberto, Modi, Apexa, Rokita, Jo Lynne, Lane, Maria V., Hartnett, Nicholas, Lopez, Raphael D., Zhang, Bo, Zhong, Chuwei, Ennis, Brian, Miller, Daniel P., Brown, Miguel A., Rathi, Komal S., Raman, Pichai, Pogoriler, Jennifer, Bhatti, Tricia, Pawel, Bruce, Glisovic-Aplenc, Tina, Teicher, Beverly, Erickson, Stephen W., Earley, Eric J., Bosse, Kristopher R., Sorensen, Poul H., Krytska, Kateryna, Mosse, Yael P., Havenith, Karin E., Zammarchi, Francesca, van Berkel, Patrick H., Smith, Malcolm A., Garcia, Benjamin A., Maris, John M., Diskin, Sharon J.
Published in Cancer cell (11.11.2024)
Published in Cancer cell (11.11.2024)
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Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets
Farazi, Thalia A, Ten Hoeve, Jelle J, Brown, Miguel, Mihailovic, Aleksandra, Horlings, Hugo M, van de Vijver, Marc J, Tuschl, Thomas, Wessels, Lodewyk F A
Published in Genome biology (07.01.2014)
Published in Genome biology (07.01.2014)
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A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs
Juranek, Stefan, Eban, Tali, Altuvia, Yael, Brown, Miguel, Morozov, Pavel, Tuschl, Thomas, Margalit, Hanah
Published in RNA (Cambridge) (01.04.2012)
Published in RNA (Cambridge) (01.04.2012)
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P832: Discovering phenotype-gene correlations using Variant WorkBench
Guo, Yiran, Li, Qi, Rozowsky, Jared, Costanza, Jeremy, Mattioni, Michele, Thibert, Jean-Philippe, Brown, Miguel, Higgins, David, Zhu, Yuankun, Heath, Allison, Resnick, Adam, Ferretti, Vincent
Published in Genetics in Medicine Open (2024)
Published in Genetics in Medicine Open (2024)
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CpG DNA activation and plasma-cell differentiation of CD27− naive human B cells
Huggins, Jennifer, Pellegrin, Tina, Felgar, Raymond E., Wei, Chungwen, Brown, Miguel, Zheng, Bo, Milner, Eric C.B., Bernstein, Steven H., Sanz, Ignacio, Zand, Martin S.
Published in Blood (15.02.2007)
Published in Blood (15.02.2007)
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Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
Luo, Guan-Zheng, Hafner, Markus, Shi, Zhimin, Brown, Miguel, Feng, Gui-Hai, Tuschl, Thomas, Wang, Xiu-Jie, Li, XiaoChing
Published in BMC genomics (26.12.2012)
Published in BMC genomics (26.12.2012)
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Modulation of Single-Cell IgG Secretion Frequency and Rates in Human Memory B Cells by CpG DNA, CD40L, IL-21, and Cell Division
Henn, Alicia D, Rebhahn, Jonathan, Brown, Miguel A, Murphy, Alison J, Coca, Mircea N, Hyrien, Ollivier, Pellegrin, Tina, Mosmann, Tim, Zand, Martin S
Published in The Journal of immunology (1950) (01.09.2009)
Published in The Journal of immunology (1950) (01.09.2009)
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Author Correction: Integrated molecular subtyping defines a curable oligometastatic state in colorectal liver metastasis
Pitroda, Sean P., Khodarev, Nikolai N., Huang, Lei, Uppal, Abhineet, Wightman, Sean C., Ganai, Sabha, Joseph, Nora, Pitt, Jason, Brown, Miguel, Forde, Martin, Mangold, Kathy, Xue, Lai, Weber, Christopher, Segal, Jeremy P., Kadri, Sabah, Stack, Melinda E., Khan, Sajid, Paty, Philip, Kaul, Karen, Andrade, Jorge, White, Kevin P., Talamonti, Mark, Posner, Mitchell C., Hellman, Samuel, Weichselbaum, Ralph R.
Published in Nature communications (13.11.2018)
Published in Nature communications (13.11.2018)
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Journal Article
The Open Pediatric Cancer Project
Geng, Zhuangzhuang, Wafula, Eric, Corbett, Ryan J, Zhang, Yuanchao, Jin, Run, Gaonkar, Krutika S, Shukla, Sangeeta, Rathi, Komal S, Hill, Dave, Lahiri, Aditya, Miller, Daniel P, Sickler, Alex, Keith, Kelsey, Blackden, Christopher, Chroni, Antonia, Brown, Miguel A, Kraya, Adam A, Koschmann, Carl J, Aldape, Kenneth, Huang, Xiaoyan, Rood, Brian R, Mason, Jennifer L, Trooskin, Gerri R, Abdullaev, Zied, Wang, Pei, Zhu, Yuankun, Farrow, Bailey K, Farrel, Alvin, Dybas, Joseph M, Zhong, Chuwei, Kuren, Nicholas Van, Zhang, Bo, Santi, Mariarita, Phul, Saksham, Chinwalla, Asif T, Resnick, Adam C, Diskin, Sharon J, Tasian, Sarah, Stefankiewicz, Stephanie, Maris, John M, Ennis, Brian M, Lueder, Matthew R, Naqvi, Ammar S, Coleman, Noel, Ma, Weiping, Taylor, Deanne, Rokita, Jo Lynne
Published in bioRxiv (11.07.2024)
Published in bioRxiv (11.07.2024)
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Integrative functional genomic analysis of human brain development and neuropsychiatric risks
Li, Mingfeng, Santpere, Gabriel, Imamura Kawasawa, Yuka, Evgrafov, Oleg V, Gulden, Forrest O, Pochareddy, Sirisha, Sunkin, Susan M, Li, Zhen, Shin, Yurae, Zhu, Ying, Sousa, André M M, Werling, Donna M, Kitchen, Robert R, Kang, Hyo Jung, Pletikos, Mihovil, Choi, Jinmyung, Muchnik, Sydney, Xu, Xuming, Wang, Daifeng, Lorente-Galdos, Belen, Liu, Shuang, Giusti-Rodríguez, Paola, Won, Hyejung, de Leeuw, Christiaan A, Pardiñas, Antonio F, Hu, Ming, Jin, Fulai, Li, Yun, Owen, Michael J, O'Donovan, Michael C, Walters, James T R, Posthuma, Danielle, Reimers, Mark A, Levitt, Pat, Weinberger, Daniel R, Hyde, Thomas M, Kleinman, Joel E, Geschwind, Daniel H, Hawrylycz, Michael J, State, Matthew W, Sanders, Stephan J, Sullivan, Patrick F, Gerstein, Mark B, Lein, Ed S, Knowles, James A, Sestan, Nenad
Published in Science (American Association for the Advancement of Science) (14.12.2018)
Published in Science (American Association for the Advancement of Science) (14.12.2018)
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