PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Yu, Nancy Y., Wagner, James R., Laird, Matthew R., Melli, Gabor, Rey, Sébastien, Lo, Raymond, Dao, Phuong, Sahinalp, S. Cenk, Ester, Martin, Foster, Leonard J., Brinkman, Fiona S. L.
Published in Bioinformatics (01.07.2010)
Published in Bioinformatics (01.07.2010)
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FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
Dooley, Damion M., Griffiths, Emma J., Gosal, Gurinder S., Buttigieg, Pier L., Hoehndorf, Robert, Lange, Matthew C., Schriml, Lynn M., Brinkman, Fiona S. L., Hsiao, William W. L.
Published in NPJ science of food (18.12.2018)
Published in NPJ science of food (18.12.2018)
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Detecting genomic islands using bioinformatics approaches
Brinkman, Fiona S. L, Langille, Morgan G. I, Hsiao, William W. L
Published in Nature reviews. Microbiology (01.05.2010)
Published in Nature reviews. Microbiology (01.05.2010)
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Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
Gardy, Jennifer L, Johnston, James C, Sui, Shannan J. Ho, Cook, Victoria J, Shah, Lena, Brodkin, Elizabeth, Rempel, Shirley, Moore, Richard, Zhao, Yongjun, Holt, Robert, Varhol, Richard, Birol, Inanc, Lem, Marcus, Sharma, Meenu K, Elwood, Kevin, Jones, Steven J.M, Brinkman, Fiona S.L, Brunham, Robert C, Tang, Patrick
Published in The New England journal of medicine (24.02.2011)
Published in The New England journal of medicine (24.02.2011)
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Composition and Associations of the Infant Gut Fungal Microbiota with Environmental Factors and Childhood Allergic Outcomes
Boutin, Rozlyn C T, Sbihi, Hind, McLaughlin, Ryan J, Hahn, Aria S, Konwar, Kishori M, Loo, Rachelle S, Dai, Darlene, Petersen, Charisse, Brinkman, Fiona S L, Winsor, Geoffrey L, Sears, Malcolm R, Moraes, Theo J, Becker, Allan B, Azad, Meghan B, Mandhane, Piush J, Subbarao, Padmaja, Turvey, Stuart E, Finlay, B Brett
Published in mBio (29.06.2021)
Published in mBio (29.06.2021)
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Evaluation of genomic island predictors using a comparative genomics approach
Langille, Morgan G I, Hsiao, William W L, Brinkman, Fiona S L
Published in BMC bioinformatics (05.08.2008)
Published in BMC bioinformatics (05.08.2008)
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Modulation of the TLR-Mediated Inflammatory Response by the Endogenous Human Host Defense Peptide LL-37
Mookherjee, Neeloffer, Brown, Kelly L, Bowdish, Dawn M. E, Doria, Silvana, Falsafi, Reza, Hokamp, Karsten, Roche, Fiona M, Mu, Ruixia, Doho, Gregory H, Pistolic, Jelena, Powers, Jon-Paul, Bryan, Jenny, Brinkman, Fiona S. L, Hancock, Robert E. W
Published in Journal of Immunology (15.02.2006)
Published in Journal of Immunology (15.02.2006)
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The association of virulence factors with genomic islands
Ho Sui, Shannan J, Fedynak, Amber, Hsiao, William W L, Langille, Morgan G I, Brinkman, Fiona S L
Published in PloS one (01.12.2009)
Published in PloS one (01.12.2009)
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Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
Winsor, Geoffrey L, Griffiths, Emma J, Lo, Raymond, Dhillon, Bhavjinder K, Shay, Julie A, Brinkman, Fiona S L
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide
Panmanee, Warunya, Charoenlap, Nisanart, Atichartpongkul, Sopapan, Mahavihakanont, Aekkapol, Whiteside, Matthew D, Winsor, Geoff, Brinkman, Fiona S L, Mongkolsuk, Skorn, Hassett, Daniel J
Published in PloS one (07.12.2017)
Published in PloS one (07.12.2017)
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A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
Uyaguari-Diaz, Miguel I, Chan, Michael, Chaban, Bonnie L, Croxen, Matthew A, Finke, Jan F, Hill, Janet E, Peabody, Michael A, Van Rossum, Thea, Suttle, Curtis A, Brinkman, Fiona S L, Isaac-Renton, Judith, Prystajecky, Natalie A, Tang, Patrick
Published in Microbiome (19.07.2016)
Published in Microbiome (19.07.2016)
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Journal Article
Contribution of the PhoP-PhoQ and PmrA-PmrB Two-Component Regulatory Systems to Mg2+-Induced Gene Regulation in Pseudomonas aeruginosa
MCPHEE, Joseph B, BAINS, Manjeet, WINSOR, Geoff, LEWENZA, Shawn, KWASNICKA, Agnieszka, BRAZAS, Michelle D, BRINKMAN, Fiona S. L, HANCOCK, R. E. W
Published in Journal of Bacteriology (01.06.2006)
Published in Journal of Bacteriology (01.06.2006)
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Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic
Song, Lingqiao, Liu, Hanshi, Brinkman, Fiona S L, Gill, Erin, Griffiths, Emma J, Hsiao, William W L, Savić-Kallesøe, Sarah, Moreira, Sandrine, Van Domselaar, Gary, Zawati, Ma'n H, Joly, Yann
Published in Frontiers in genetics (24.03.2022)
Published in Frontiers in genetics (24.03.2022)
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Journal Article
IslandPath: aiding detection of genomic islands in prokaryotes
Hsiao, William, Wan, Ivan, Jones, Steven J., Brinkman, Fiona S. L.
Published in Bioinformatics (12.02.2003)
Published in Bioinformatics (12.02.2003)
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Journal Article
Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality
Van Rossum, Thea, Peabody, Michael A, Uyaguari-Diaz, Miguel I, Cronin, Kirby I, Chan, Michael, Slobodan, Jared R, Nesbitt, Matthew J, Suttle, Curtis A, Hsiao, William W L, Tang, Patrick K C, Prystajecky, Natalie A, Brinkman, Fiona S L
Published in Frontiers in microbiology (16.12.2015)
Published in Frontiers in microbiology (16.12.2015)
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