Exploring attractor bifurcations in Boolean networks
Beneš, Nikola, Brim, Luboš, Kadlecaj, Jakub, Pastva, Samuel, Šafránek, David
Published in BMC bioinformatics (11.05.2022)
Published in BMC bioinformatics (11.05.2022)
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Journal Article
AEON.py: Python library for attractor analysis in asynchronous Boolean networks
Beneš, Nikola, Brim, Luboš, Huvar, Ondřej, Pastva, Samuel, Šafránek, David, Šmijáková, Eva
Published in Bioinformatics (Oxford, England) (31.10.2022)
Published in Bioinformatics (Oxford, England) (31.10.2022)
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Journal Article
BDD-Based Algorithm for SCC Decomposition of Edge-Coloured Graphs
Beneš, Nikola, Brim, Luboš, Pastva, Samuel, Šafránek, David
Published in Logical methods in computer science (01.01.2022)
Published in Logical methods in computer science (01.01.2022)
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Journal Article
Parallel One-Step Control of Parametrised Boolean Networks
Brim, Luboš, Pastva, Samuel, Šafránek, David, Šmijáková, Eva
Published in Mathematics (Basel) (01.03.2021)
Published in Mathematics (Basel) (01.03.2021)
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Journal Article
On Parameter Synthesis by Parallel Model Checking
Barnat, J., Brim, L., Krejci, A., Streck, A., Safranek, D., Vejnar, M., Vejpustek, T.
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.05.2012)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.05.2012)
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Journal Article
On Expressing and Monitoring Oscillatory Dynamics
Dluhoš, Petr, Brim, Luboš, Šafránek, David
Published in Electronic proceedings in theoretical computer science (15.08.2012)
Published in Electronic proceedings in theoretical computer science (15.08.2012)
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Journal Article
Boolean network sketches: a unifying framework for logical model inference
Beneš, Nikola, Brim, Luboš, Huvar, Ondřej, Pastva, Samuel, Šafránek, David
Published in Bioinformatics (Oxford, England) (03.04.2023)
Published in Bioinformatics (Oxford, England) (03.04.2023)
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Journal Article
Using Strategy Improvement to Stay Alive
Brim, Luboš, Chaloupka, Jakub
Published in Electronic proceedings in theoretical computer science (09.06.2010)
Published in Electronic proceedings in theoretical computer science (09.06.2010)
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Journal Article
E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes
Šafránek, David, Červený, Jan, Klement, Matěj, Pospíšilová, Jana, Brim, Luboš, Lazár, Dušan, Nedbal, Ladislav
Published in BioSystems (01.02.2011)
Published in BioSystems (01.02.2011)
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Journal Article
Platform Dependent Verification: On Engineering Verification Tools for 21st Century
Brim, Luboš, Barnat, Jiří
Published in Electronic proceedings in theoretical computer science (31.10.2011)
Published in Electronic proceedings in theoretical computer science (31.10.2011)
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Journal Article
Precise parameter synthesis for stochastic biochemical systems
Češka, Milan, Dannenberg, Frits, Paoletti, Nicola, Kwiatkowska, Marta, Brim, Luboš
Published in Acta informatica (01.09.2017)
Published in Acta informatica (01.09.2017)
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Journal Article
DiVinE-CUDA - A Tool for GPU Accelerated LTL Model Checking
Barnat, Jiří, Brim, Luboš, Češka, Milan
Published in Electronic proceedings in theoretical computer science (15.12.2009)
Published in Electronic proceedings in theoretical computer science (15.12.2009)
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Journal Article
Computing Optimal Cycle Mean in Parallel on CUDA
Barnat, Jiří, Bauch, Petr, Brim, Luboš, Češka, Milan
Published in Electronic proceedings in theoretical computer science (31.10.2011)
Published in Electronic proceedings in theoretical computer science (31.10.2011)
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Journal Article