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Computational pan-genomics: status, promises and challenges
Marschall, Tobias, Marz, Manja, Abeel, Thomas, Dijkstra, Louis, Dutilh, Bas E, Ghaffaari, Ali, Kersey, Paul, Kloosterman, Wigard P, Mäkinen, Veli, Novak, Adam M, Paten, Benedict, Porubsky, David, Rivals, Eric, Alkan, Can, Baaijens, Jasmijn A, Paul I W De Bakker, Boeva, Valentina, Bonnal, Raoul J P, Chiaromonte, Francesca, Chikhi, Rayan, Ciccarelli, Francesca D, Cijvat, Robin, Datema, Erwin, Van Duijn, Cornelia M, Eichler, Evan E, Ernst, Corinna, Eskin, Eleazar, Garrison, Erik, El-Kebir, Mohammed, Klau, Gunnar W, Korbel, Jan O, Eric-Wubbo Lameijer, Langmead, Benjamin, Martin, Marcel, Medvedev, Paul, Mu, John C, Neerincx, Pieter, Ouwens, Klaasjan, Peterlongo, Pierre, Pisanti, Nadia, Rahmann, Sven, Raphael, Ben, Reinert, Knut, de Ridder, Dick, de Ridder, Jeroen, Schlesner, Matthias, Schulz-Trieglaff, Ole, Sanders, Ashley D, Sheikhizadeh, Siavash, Shneider, Carl, Smit, Sandra, Valenzuela, Daniel, Wang, Jiayin, Wessels, Lodewyk, Zhang, Ying, Guryev, Victor, Vandin, Fabio, Ye, Kai, Schönhuth, Alexander
Published in Briefings in bioinformatics (01.01.2018)
Published in Briefings in bioinformatics (01.01.2018)
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Computational/in silico methods in drug target and lead prediction
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Published in Briefings in bioinformatics (25.09.2020)
Published in Briefings in bioinformatics (25.09.2020)
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ggmsa: a visual exploration tool for multiple sequence alignment and associated data
Zhou, Lang, Feng, Tingze, Xu, Shuangbin, Gao, Fangluan, Lam, Tommy T, Wang, Qianwen, Wu, Tianzhi, Huang, Huina, Zhan, Li, Li, Lin, Guan, Yi, Dai, Zehan, Yu, Guangchuang
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Published in Briefings in bioinformatics (18.07.2022)
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Application of deep learning methods in biological networks
Jin, Shuting, Zeng, Xiangxiang, Xia, Feng, Huang, Wei, Liu, Xiangrong
Published in Briefings in bioinformatics (22.03.2021)
Published in Briefings in bioinformatics (22.03.2021)
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A review of network-based approaches to drug repositioning
Lotfi Shahreza, Maryam, Ghadiri, Nasser, Mousavi, Sayed Rasoul, Varshosaz, Jaleh, Green, James R
Published in Briefings in bioinformatics (28.09.2018)
Published in Briefings in bioinformatics (28.09.2018)
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Sequence clustering in bioinformatics: an empirical study
Zou, Quan, Lin, Gang, Jiang, Xingpeng, Liu, Xiangrong, Zeng, Xiangxiang
Published in Briefings in bioinformatics (17.01.2020)
Published in Briefings in bioinformatics (17.01.2020)
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Biological network analysis with deep learning
Muzio, Giulia, O’Bray, Leslie, Borgwardt, Karsten
Published in Briefings in bioinformatics (22.03.2021)
Published in Briefings in bioinformatics (22.03.2021)
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Circular RNAs and complex diseases: from experimental results to computational models
Wang, Chun-Chun, Han, Chen-Di, Zhao, Qi, Chen, Xing
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features
Chu, Yanyi, Kaushik, Aman Chandra, Wang, Xiangeng, Wang, Wei, Zhang, Yufang, Shan, Xiaoqi, Salahub, Dennis Russell, Xiong, Yi, Wei, Dong-Qing
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Machine learning for synergistic network pharmacology: a comprehensive overview
Noor, Fatima, Asif, Muhammad, Ashfaq, Usman Ali, Qasim, Muhammad, Tahir ul Qamar, Muhammad
Published in Briefings in bioinformatics (19.05.2023)
Published in Briefings in bioinformatics (19.05.2023)
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DeepDDS: deep graph neural network with attention mechanism to predict synergistic drug combinations
Wang, Jinxian, Liu, Xuejun, Shen, Siyuan, Deng, Lei, Liu, Hui
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Graph representation learning in bioinformatics: trends, methods and applications
Yi, Hai-Cheng, You, Zhu-Hong, Huang, De-Shuang, Kwoh, Chee Keong
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Drug–target interaction prediction: databases, web servers and computational models
Chen, Xing, Yan, Chenggang Clarence, Zhang, Xiaotian, Zhang, Xu, Dai, Feng, Yin, Jian, Zhang, Yongdong
Published in Briefings in bioinformatics (01.07.2016)
Published in Briefings in bioinformatics (01.07.2016)
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Revealing protein–lncRNA interaction
Ferrè, Fabrizio, Colantoni, Alessio, Helmer-Citterich, Manuela
Published in Briefings in bioinformatics (01.01.2016)
Published in Briefings in bioinformatics (01.01.2016)
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Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes
Xia, Siyu, Feng, Jing, Lei, Lijun, Hu, Jun, Xia, Linjian, Wang, Jun, Xiang, Yu, Liu, Lingjun, Zhong, Shan, Han, Leng, He, Chunjiang
Published in Briefings in bioinformatics (01.11.2017)
Published in Briefings in bioinformatics (01.11.2017)
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Visualizing and comparing circular genomes using the CGView family of tools
Stothard, Paul, Grant, Jason R, Van Domselaar, Gary
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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In silico clinical trials: concepts and early adoptions
Pappalardo, Francesco, Russo, Giulia, Tshinanu, Flora Musuamba, Viceconti, Marco
Published in Briefings in bioinformatics (27.09.2019)
Published in Briefings in bioinformatics (27.09.2019)
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