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DeepTorrent: a deep learning-based approach for predicting DNA N4-methylcytosine sites
Liu, Quanzhong, Chen, Jinxiang, Wang, Yanze, Li, Shuqin, Jia, Cangzhi, Song, Jiangning, Li, Fuyi
Published in Briefings in bioinformatics (20.05.2021)
Published in Briefings in bioinformatics (20.05.2021)
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Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients
Mahmud, S M Hasan, Al-Mustanjid, Md, Akter, Farzana, Rahman, Md Shazzadur, Ahmed, Kawsar, Rahman, Md Habibur, Chen, Wenyu, Moni, Mohammad Ali
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Published in Briefings in bioinformatics (02.09.2021)
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Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework
Hasan, Md Mehedi, Basith, Shaherin, Khatun, Mst Shamima, Lee, Gwang, Manavalan, Balachandran, Kurata, Hiroyuki
Published in Briefings in bioinformatics (20.05.2021)
Published in Briefings in bioinformatics (20.05.2021)
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Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences
Chen, Zhen, Zhao, Pei, Li, Fuyi, Wang, Yanan, Smith, A Ian, Webb, Geoffrey I, Akutsu, Tatsuya, Baggag, Abdelkader, Bensmail, Halima, Song, Jiangning
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Published in Briefings in bioinformatics (01.09.2020)
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Pharmacoinformatics and molecular dynamics simulation-based phytochemical screening of neem plant (Azadiractha indica) against human cancer by targeting MCM7 protein
Ahammad, Foysal, Alam, Rahat, Mahmud, Rasel, Akhter, Shahina, Talukder, Enamul Kabir, Tonmoy, Al Mahmud, Fahim, Salman, Al-Ghamdi, Khalid, Samad, Abdus, Qadri, Ishtiaq
Published in Briefings in bioinformatics (02.09.2021)
Published in Briefings in bioinformatics (02.09.2021)
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Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2
Mahmud, Shafi, Uddin, Mohammad Abu Raihan, Paul, Gobindo Kumar, Shimu, Mst Sharmin Sultana, Islam, Saiful, Rahman, Ekhtiar, Islam, Ariful, Islam, Md Samiul, Promi, Maria Meha, Emran, Talha Bin, Saleh, Md Abu
Published in Briefings in Bioinformatics (22.03.2021)
Published in Briefings in Bioinformatics (22.03.2021)
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A geometric deep learning framework for drug repositioning over heterogeneous information networks
Zhao, Bo-Wei, Su, Xiao-Rui, Hu, Peng-Wei, Ma, Yu-Peng, Zhou, Xi, Hu, Lun
Published in Briefings in bioinformatics (19.11.2022)
Published in Briefings in bioinformatics (19.11.2022)
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Using Tablet for visual exploration of second-generation sequencing data
Milne, I., Stephen, G., Bayer, M., Cock, P. J. A., Pritchard, L., Cardle, L., Shaw, P. D., Marshall, D.
Published in Briefings in bioinformatics (01.03.2013)
Published in Briefings in bioinformatics (01.03.2013)
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Cell–cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies
Peng, Lihong, Wang, Feixiang, Wang, Zhao, Tan, Jingwei, Huang, Li, Tian, Xiongfei, Liu, Guangyi, Zhou, Liqian
Published in Briefings in bioinformatics (18.07.2022)
Published in Briefings in bioinformatics (18.07.2022)
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A graph auto-encoder model for miRNA-disease associations prediction
Li, Zhengwei, Li, Jiashu, Nie, Ru, You, Zhu-Hong, Bao, Wenzheng
Published in Briefings in bioinformatics (01.07.2021)
Published in Briefings in bioinformatics (01.07.2021)
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Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
Lightbody, Gaye, Haberland, Valeriia, Browne, Fiona, Taggart, Laura, Zheng, Huiru, Parkes, Eileen, Blayney, Jaine K
Published in Briefings in bioinformatics (27.09.2019)
Published in Briefings in bioinformatics (27.09.2019)
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Toward more realistic drug-target interaction predictions
Pahikkala, T., Airola, A., Pietila, S., Shakyawar, S., Szwajda, A., Tang, J., Aittokallio, T.
Published in Briefings in bioinformatics (01.03.2015)
Published in Briefings in bioinformatics (01.03.2015)
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Toward a gold standard for benchmarking gene set enrichment analysis
Geistlinger, Ludwig, Csaba, Gergely, Santarelli, Mara, Ramos, Marcel, Schiffer, Lucas, Turaga, Nitesh, Law, Charity, Davis, Sean, Carey, Vincent, Morgan, Martin, Zimmer, Ralf, Waldron, Levi
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Deep learning in retrosynthesis planning: datasets, models and tools
Dong, Jingxin, Zhao, Mingyi, Liu, Yuansheng, Su, Yansen, Zeng, Xiangxiang
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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An effective self-supervised framework for learning expressive molecular global representations to drug discovery
Li, Pengyong, Wang, Jun, Qiao, Yixuan, Chen, Hao, Yu, Yihuan, Yao, Xiaojun, Gao, Peng, Xie, Guotong, Song, Sen
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data
Nguyen, Hung, Tran, Duc, Tran, Bang, Pehlivan, Bahadir, Nguyen, Tin
Published in Briefings in bioinformatics (20.05.2021)
Published in Briefings in bioinformatics (20.05.2021)
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