Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool
WOODS, Conan K, BRUMME, Chanson J, LIU, Tommy F, CHUI, Celia K. S, CHU, Anna L, WYNHOVEN, Brian, HALL, Tom A, TREVINO, Christina, SHAFER, Robert W, HARRIGAN, P. Richard
Published in Journal of Clinical Microbiology (01.06.2012)
Published in Journal of Clinical Microbiology (01.06.2012)
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N348I in the connection domain of HIV-1 reverse transcriptase confers zidovudine and nevirapine resistance
Yap, Soo-Huey, Sheen, Chih-Wei, Fahey, Jonathan, Zanin, Mark, Tyssen, David, Lima, Viviane Dias, Wynhoven, Brian, Kuiper, Michael, Sluis-Cremer, Nicolas, Harrigan, P Richard, Tachedjian, Gilda
Published in PLoS medicine (01.12.2007)
Published in PLoS medicine (01.12.2007)
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Changes in Mitochondrial DNA as a Marker of Nucleoside Toxicity in HIV-Infected Patients
Côté, Hélène C.F, Brumme, Zabrina L, Craib, Kevin J.P, Alexander, Christopher S, Wynhoven, Brian, Ting, Lillian, Wong, Hubert, Harris, Marianne, Harrigan, P. Richard, O'Shaughnessy, Michael V, Montaner, Julio S.G
Published in The New England journal of medicine (14.03.2002)
Published in The New England journal of medicine (14.03.2002)
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Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
Swenson, Luke C, Moores, Andrew, Low, Andrew J, Thielen, Alexander, Dong, Winnie, Woods, Conan, Jensen, Mark A, Wynhoven, Brian, Chan, Dennison, Glascock, Christopher, Harrigan, P Richard
Published in Journal of acquired immune deficiency syndromes (1999) (15.08.2010)
Published in Journal of acquired immune deficiency syndromes (1999) (15.08.2010)
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Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi
Xu, Junhuan, Linning, Rob, Fellers, John, Dickinson, Matthew, Zhu, Wenhan, Antonov, Ivan, Joly, David L, Donaldson, Michael E, Eilam, Tamar, Anikster, Yehoshua, Banks, Travis, Munro, Sarah, Mayo, Michael, Wynhoven, Brian, Ali, Johar, Moore, Richard, McCallum, Brent, Borodovsky, Mark, Saville, Barry, Bakkeren, Guus
Published in BMC genomics (24.03.2011)
Published in BMC genomics (24.03.2011)
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Technical and regulatory shortcomings of the TaqMan version 1 HIV viral load assay
Brumme, Chanson J, Swenson, Luke C, Wynhoven, Brian, Yip, Benita, Skinner, Stuart, Lima, Viviane Dias, Montaner, Julio S G, Harrigan, P Richard
Published in PloS one (24.08.2012)
Published in PloS one (24.08.2012)
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"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice
Swenson, Luke C, Pollock, Graham, Wynhoven, Brian, Mo, Theresa, Dong, Winnie, Hogg, Robert S, Montaner, Julio S G, Harrigan, P Richard
Published in PloS one (24.02.2011)
Published in PloS one (24.02.2011)
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Effects of Human Leukocyte Antigen Class I Genetic Parameters on Clinical Outcomes and Survival after Initiation of Highly Active Antiretroviral Therapy
Brumme, Zabrina L., Brumme, Chanson J., Chui, Celia, Mo, Theresa, Wynhoven, Brian, Woods, Conan K., Henrick, Bethany M., Hogg, Robert S., Montaner, Julio S. G., Harrigan, P. Richard
Published in The Journal of infectious diseases (01.06.2007)
Published in The Journal of infectious diseases (01.06.2007)
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A Mutation in the 3′ Region of the Human Immunodeficiency Virus Type 1 Reverse Transcriptase (Y318F) Associated with Nonnucleoside Reverse Transcriptase Inhibitor Resistance
Harrigan, P Richard, Salim, Mahboob, Stammers, David K, Wynhoven, Brian, Brumme, Zabrina L, McKenna, Paula, Larder, Brendan, Kemp, S D
Published in Journal of Virology (01.07.2002)
Published in Journal of Virology (01.07.2002)
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Improved Virological Outcomes in British Columbia Concomitant with Decreasing Incidence of HIV Type 1 Drug Resistance Detection
Gill, Vikram S., Lima, Viviane D., Zhang, Wen, Wynhoven, Brian, Yip, Benita, Hogg, Robert S., Montaner, Julio S.G., Harrigan, P. Richard
Published in Clinical infectious diseases (01.01.2010)
Published in Clinical infectious diseases (01.01.2010)
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Predictors of HIV Drug-Resistance Mutations in a Large Antiretroviral-Naive Cohort Initiating Triple Antiretroviral Therapy
Harrigan, P. Richard, Hogg, Robert S., Dong, Winnie W. Y., Yip, Benita, Wynhoven, Brian, Woodward, Justin, Brumme, Chanson J., Brumme, Zabrina L., Mo, Theresa, Alexander, Chris S., Montaner, Julio S. G.
Published in The Journal of infectious diseases (01.02.2005)
Published in The Journal of infectious diseases (01.02.2005)
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Molecular and Clinical Epidemiology of CXCR4-Using HIV-1 in a Large Population of Antiretroviral-Naive Individuals
Brumme, Zabrina L., Goodrich, James, Mayer, Howard B., Brumme, Chanson J., Henrick, Bethany M., Wynhoven, Brian, Asselin, Jerome J., Cheung, Peter K., Hogg, Robert S., Montaner, Julio S. G., Harrigan, P. Richard
Published in The Journal of infectious diseases (01.08.2005)
Published in The Journal of infectious diseases (01.08.2005)
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Impact of HIV-1 subtype and antiretroviral therapy on protease and reverse transcriptase genotype: results of a global collaboration
Kantor, Rami, Katzenstein, David A, Efron, Brad, Carvalho, Ana Patricia, Wynhoven, Brian, Cane, Patricia, Clarke, John, Sirivichayakul, Sunee, Soares, Marcelo A, Snoeck, Joke, Pillay, Candice, Rudich, Hagit, Rodrigues, Rosangela, Holguin, Africa, Ariyoshi, Koya, Bouzas, Maria Belen, Cahn, Pedro, Sugiura, Wataru, Soriano, Vincent, Brigido, Luis F, Grossman, Zehava, Morris, Lynn, Vandamme, Anne-Mieke, Tanuri, Amilcar, Phanuphak, Praphan, Weber, Jonathan N, Pillay, Deenan, Harrigan, P Richard, Camacho, Ricardo, Schapiro, Jonathan M, Shafer, Robert W
Published in PLoS medicine (01.04.2005)
Published in PLoS medicine (01.04.2005)
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Genomics of hybrid poplar (Populus trichocarpa[multiplication] deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar
Ralph, Steven, Oddy, Claire, Cooper, Dawn, Yueh, Hesther, Jancsik, Sharon, Kolosova, Natalia, Philippe, Ryan N, Aeschliman, Dana, White, Rick, Huber, Dezene, Ritland, Carol E, Benoit, FranÇois, Rigby, Tracey, Nantel, André, Butterfield, Yaron S.N, Kirkpatrick, Robert, Chun, Elizabeth, Liu, Jerry, Palmquist, Diana, Wynhoven, Brian, Stott, Jeffrey, Yang, George, Barber, Sarah, Holt, Robert A, Siddiqui, Asim, Jones, Steven J.M, Marra, Marco A, Ellis, Brian E, Douglas, Carl J, Ritland, Kermit, Bohlmann, JÖrg
Published in Molecular ecology (01.04.2006)
Published in Molecular ecology (01.04.2006)
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Increasingly Successful Highly Active Antiretroviral Therapy Delays the Emergence of New HLA Class 1―Associated Escape Mutations in HIV-1
KNAPP, David J. H. F, BRUMME, Zabrina L, SHENG YUAN HUANG, WYNHOVEN, Brian, DONG, Winnie W. Y, MO, Theresa, HARRIGAN, P. Richard, BRUMME, Chanson J
Published in Clinical infectious diseases (2012)
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Published in Clinical infectious diseases (2012)
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Increasingly Successful Highly Active Antiretroviral Therapy Delays the Emergence of New HLA Class I—Associated Escape Mutations in HIV-1
Knapp, David J. H. F., Brumme, Zabrina L., Huang, Sheng Yuan, Wynhoven, Brian, Dong, Winnie W. Y., Mo, Theresa, Harrigan, P. Richard, Brumme, Chanson J.
Published in Clinical infectious diseases (01.06.2012)
Published in Clinical infectious diseases (01.06.2012)
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Discordances between Interpretation Algorithms for Genotypic Resistance to Protease and Reverse Transcriptase Inhibitors of Human Immunodeficiency Virus Are Subtype Dependent
SNOECK, Joke, KANTOR, Rami, PILLAY, Candice, SIRIVICHAYAKUL, Sunee, ARIYOSHI, Koya, HOLGUIN, Africa, RUDICH, Hagit, RODRIGUES, Rosangela, BOUZAS, Maria Belen, BRUN-VEZINET, Francoise, REID, Caroline, CAHN, Pedro, SHAFER, Robert W, BRIGIDO, Luis Fernando, GROSSMAN, Zehava, SORIANO, Vincent, SUGIURA, Wataru, PHANUPHAK, Praphan, MORRIS, Lynn, WEBER, Jonathan, PILLAY, Deenan, TANURI, Amilcar, HARRIGAN, Richard P, VAN LAETHEM, Kristel, CAMACHO, Ricardo, SCHAPIRO, Jonathan M, KATZENSTEIN, David, VANDAMME, Anne-Mieke, DEFORCHE, Koen, CARVALHO, Ana Patricia, WYNHOVEN, Brian, SOARES, Marcelo A, CANE, Patricia, CLARKE, John
Published in Antimicrobial Agents and Chemotherapy (01.02.2006)
Published in Antimicrobial Agents and Chemotherapy (01.02.2006)
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Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy
BRUMME, Zabrina L, DONG, Winnie W. Y, HARRIGAN, P. Richard, YIP, Benita, WYNHOVEN, Brian, HOFFMAN, Noah G, SWANSTROM, Ronald, JENSEN, Mark A, MULLINS, James I, HOGG, Robert S, MONTANER, Julio S. G
Published in AIDS (London) (05.03.2004)
Published in AIDS (London) (05.03.2004)
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Connection Domain Mutations N348I and A360V in HIV-1 Reverse Transcriptase Enhance Resistance to 3′-Azido-3′-deoxythymidine through Both RNase H-dependent and -independent MechanismsS
Ehteshami, Maryam, Beilhartz, Greg L., Scarth, Brian J., Tchesnokov, Egor P., McCormick, Suzanne, Wynhoven, Brian, Harrigan, P. Richard, Götte, Matthias
Published in The Journal of biological chemistry (08.08.2008)
Published in The Journal of biological chemistry (08.08.2008)
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Rare mutations at codon 103 of HIV-1 reverse transcriptase can confer resistance to non-nucleoside reverse transcriptase inhibitors
HARRIGAN, P. Richard, MO, Theresa, WYNHOVEN, Brian, HIRSCH, Jennifer, BRUMME, Zabrina, MCKENNA, Paula, PATTERY, Theresa, VINGERHOETS, Johan, BACHELER, Lee T
Published in AIDS (London) (24.03.2005)
Published in AIDS (London) (24.03.2005)
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