Ancient gene linkages support ctenophores as sister to other animals
Schultz, Darrin T, Haddock, Steven H D, Bredeson, Jessen V, Green, Richard E, Simakov, Oleg, Rokhsar, Daniel S
Published in Nature (London) (01.06.2023)
Published in Nature (London) (01.06.2023)
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Journal Article
Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation
Ramu, Punna, Esuma, Williams, Kawuki, Robert, Rabbi, Ismail Y, Egesi, Chiedozie, Bredeson, Jessen V, Bart, Rebecca S, Verma, Janu, Buckler, Edward S, Lu, Fei
Published in Nature genetics (01.06.2017)
Published in Nature genetics (01.06.2017)
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Journal Article
Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
Bredeson, Jessen V, Lyons, Jessica B, Prochnik, Simon E, Wu, G Albert, Ha, Cindy M, Edsinger-Gonzales, Eric, Grimwood, Jane, Schmutz, Jeremy, Rabbi, Ismail Y, Egesi, Chiedozie, Nauluvula, Poasa, Lebot, Vincent, Ndunguru, Joseph, Mkamilo, Geoffrey, Bart, Rebecca S, Setter, Tim L, Gleadow, Roslyn M, Kulakow, Peter, Ferguson, Morag E, Rounsley, Steve, Rokhsar, Daniel S
Published in Nature biotechnology (01.05.2016)
Published in Nature biotechnology (01.05.2016)
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Journal Article
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, Jessen V, Lyons, Jessica B, Oniyinde, Ibukun O, Okereke, Nneka R, Kolade, Olufisayo, Nnabue, Ikenna, Nwadili, Christian O, Hřibová, Eva, Parker, Matthew, Nwogha, Jeremiah, Shu, Shengqiang, Carlson, Joseph, Kariba, Robert, Muthemba, Samuel, Knop, Katarzyna, Barton, Geoffrey J, Sherwood, Anna V, Lopez-Montes, Antonio, Asiedu, Robert, Jamnadass, Ramni, Muchugi, Alice, Goodstein, David, Egesi, Chiedozie N, Featherston, Jonathan, Asfaw, Asrat, Simpson, Gordon G, Doležel, Jaroslav, Hendre, Prasad S, Van Deynze, Allen, Kumar, Pullikanti Lava, Obidiegwu, Jude E, Bhattacharjee, Ranjana, Rokhsar, Daniel S
Published in Nature communications (14.04.2022)
Published in Nature communications (14.04.2022)
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Journal Article
New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog X. borealis
Evans, Ben J., Mudd, Austin B., Bredeson, Jessen V., Furman, Benjamin L. S., Wasonga, Domnick Victor, Lyons, Jessica B., Harland, Richard M., Rokhsar, Dan S.
Published in Journal of evolutionary biology (01.12.2022)
Published in Journal of evolutionary biology (01.12.2022)
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Journal Article
A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
Peng, Ze, Bredeson, Jessen V., Wu, Guohong A., Shu, Shengqiang, Rawat, Nidhi, Du, Dongliang, Parajuli, Saroj, Yu, Qibin, You, Qian, Rokhsar, Daniel S., Gmitter, Frederick G., Deng, Zhanao
Published in The Plant journal : for cell and molecular biology (01.12.2020)
Published in The Plant journal : for cell and molecular biology (01.12.2020)
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Journal Article
Genetic analysis and QTL mapping for multiple biotic stress resistance in cassava
Garcia-Oliveira, Ana Luísa, Kimata, Bernadetha, Kasele, Salum, Kapinga, Fortunus, Masumba, Esther, Mkamilo, Geoffrey, Sichalwe, Caroline, Bredeson, Jessen V, Lyons, Jessica B, Shah, Trushar, Muranaka, Satoru, Katari, Manpreet S, Ferguson, Morag E
Published in PloS one (05.08.2020)
Published in PloS one (05.08.2020)
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Journal Article
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
Bredeson, Jessen V, Mudd, Austin B, Medina-Ruiz, Sofia, Mitros, Therese, Smith, Owen Kabnick, Miller, Kelly E, Lyons, Jessica B, Batra, Sanjit S, Park, Joseph, Berkoff, Kodiak C, Plott, Christopher, Grimwood, Jane, Schmutz, Jeremy, Aguirre-Figueroa, Guadalupe, Khokha, Mustafa K, Lane, Maura, Philipp, Isabelle, Laslo, Mara, Hanken, James, Kerdivel, Gwenneg, Buisine, Nicolas, Sachs, Laurent M, Buchholz, Daniel R, Kwon, Taejoon, Smith-Parker, Heidi, Gridi-Papp, Marcos, Ryan, Michael J, Denton, Robert D, Malone, John H, Wallingford, John B, Straight, Aaron F, Heald, Rebecca, Hockemeyer, Dirk, Harland, Richard M, Rokhsar, Daniel S
Published in Nature communications (17.01.2024)
Published in Nature communications (17.01.2024)
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Journal Article
Current status and impending progress for cassava structural genomics
Lyons, Jessica B., Bredeson, Jessen V., Mansfeld, Ben N., Bauchet, Guillaume Jean, Berry, Jeffrey, Boyher, Adam, Mueller, Lukas A., Rokhsar, Daniel S., Bart, Rebecca S.
Published in Plant molecular biology (01.06.2022)
Published in Plant molecular biology (01.06.2022)
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Journal Article
Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution
Mudd, Austin B, Bredeson, Jessen V, Baum, Rachel, Hockemeyer, Dirk, Rokhsar, Daniel S
Published in Communications biology (01.09.2020)
Published in Communications biology (01.09.2020)
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Journal Article
Deeply conserved synteny and the evolution of metazoan chromosomes
Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T, O'Connell, Brendan L, Dear, Paul, Martinez, Daniel E, Steele, Robert E, Green, Richard E, David, Charles N, Rokhsar, Daniel S
Published in Science advances (02.02.2022)
Published in Science advances (02.02.2022)
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Journal Article
Correction to: Current status and impending progress for cassava structural genomics
Lyons, Jessica B., Bredeson, Jessen V., Mansfeld, Ben N., Bauchet, Guillaume Jean, Berry, Jeffrey, Boyher, Adam, Mueller, Lukas A., Rokhsar, Daniel S., Bart, Rebecca S.
Published in Plant molecular biology (01.06.2022)
Published in Plant molecular biology (01.06.2022)
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Journal Article
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Nzuki, Inosters, Katari, Manpreet S, Bredeson, Jessen V, Masumba, Esther, Kapinga, Fortunus, Salum, Kasele, Mkamilo, Geoffrey S, Shah, Trushar, Lyons, Jessica B, Rokhsar, Daniel S, Rounsley, Steve, Myburg, Alexander A, Ferguson, Morag E
Published in Frontiers in plant science (21.07.2017)
Published in Frontiers in plant science (21.07.2017)
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Journal Article
Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources
Ferguson, Morag E, Eyles, Rodney P, Garcia-Oliveira, Ana Luísa, Kapinga, Fortunus, Masumba, Esther A, Amuge, Teddy, Bredeson, Jessen V, Rokhsar, Daniel S, Lyons, Jessica B, Shah, Trushar, Rounsley, Steve, Mkamilo, Geoffrey
Published in Frontiers in plant science (2023)
Published in Frontiers in plant science (2023)
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Journal Article
Genome biology of the paleotetraploid perennial biomass crop Miscanthus
Mitros, Therese, Session, Adam M., James, Brandon T., Wu, Guohong Albert, Belaffif, Mohammad B., Clark, Lindsay V., Shu, Shengqiang, Dong, Hongxu, Barling, Adam, Holmes, Jessica R., Mattick, Jessica E., Bredeson, Jessen V., Liu, Siyao, Farrar, Kerrie, Głowacka, Katarzyna, Jeżowski, Stanisław, Barry, Kerrie, Chae, Won Byoung, Juvik, John A., Gifford, Justin, Oladeinde, Adebosola, Yamada, Toshihiko, Grimwood, Jane, Putnam, Nicholas H., De Vega, Jose, Barth, Susanne, Klaas, Manfred, Hodkinson, Trevor, Li, Laigeng, Jin, Xiaoli, Peng, Junhua, Yu, Chang Yeon, Heo, Kweon, Yoo, Ji Hye, Ghimire, Bimal Kumar, Donnison, Iain S., Schmutz, Jeremy, Hudson, Matthew E., Sacks, Erik J., Moose, Stephen P., Swaminathan, Kankshita, Rokhsar, Daniel S.
Published in Nature communications (28.10.2020)
Published in Nature communications (28.10.2020)
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Journal Article
HAPCAD: An open-source tool to detect PCR crossovers in next-generation sequencing generated HLA data
McDevitt, Shana L, Bredeson, Jessen V, Roy, Scott W, Lane, Julie A, Noble, Janelle A
Published in Human immunology (01.03.2016)
Published in Human immunology (01.03.2016)
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Journal Article
Muntjac chromosome evolution and architecture
Mudd, Austin B, Bredeson, Jessen V, Baum, Rachel, Hockemeyer, Dirk, Rokhsar, Daniel S
Published in bioRxiv (18.09.2019)
Published in bioRxiv (18.09.2019)
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