Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes
Brannan, Kristopher W., Chaim, Isaac A., Marina, Ryan J., Yee, Brian A., Kofman, Eric R., Lorenz, Daniel A., Jagannatha, Pratibha, Dong, Kevin D., Madrigal, Assael A., Underwood, Jason G., Yeo, Gene W.
Published in Nature methods (01.05.2021)
Published in Nature methods (01.05.2021)
Get full text
Journal Article
SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes
Brannan, Kristopher W., Jin, Wenhao, Huelga, Stephanie C., Banks, Charles A.S., Gilmore, Joshua M., Florens, Laurence, Washburn, Michael P., Van Nostrand, Eric L., Pratt, Gabriel A., Schwinn, Marie K., Daniels, Danette L., Yeo, Gene W.
Published in Molecular cell (20.10.2016)
Published in Molecular cell (20.10.2016)
Get full text
Journal Article
Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing
Marina, Ryan J., Brannan, Kristopher W., Dong, Kevin D., Yee, Brian A., Yeo, Gene W.
Published in Cell reports (Cambridge) (03.11.2020)
Published in Cell reports (Cambridge) (03.11.2020)
Get full text
Journal Article
A relay velocity model infers cell-dependent RNA velocity
Li, Shengyu, Zhang, Pengzhi, Chen, Weiqing, Ye, Lingqun, Brannan, Kristopher W., Le, Nhat-Tu, Abe, Jun-ichi, Cooke, John P., Wang, Guangyu
Published in Nature biotechnology (01.01.2024)
Published in Nature biotechnology (01.01.2024)
Get full text
Journal Article
HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence
Jin, Wenhao, Brannan, Kristopher W., Kapeli, Katannya, Park, Samuel S., Tan, Hui Qing, Gosztyla, Maya L., Mujumdar, Mayuresh, Ahdout, Joshua, Henroid, Bryce, Rothamel, Katherine, Xiang, Joy S., Wong, Limsoon, Yeo, Gene W.
Published in Molecular cell (20.07.2023)
Published in Molecular cell (20.07.2023)
Get full text
Journal Article
Large-scale map of RNA-binding protein interactomes across the mRNA life cycle
Street, Lena A., Rothamel, Katherine L., Brannan, Kristopher W., Jin, Wenhao, Bokor, Benjamin J., Dong, Kevin, Rhine, Kevin, Madrigal, Assael, Al-Azzam, Norah, Kim, Jenny Kim, Ma, Yanzhe, Gorhe, Darvesh, Abdou, Ahmed, Wolin, Erica, Mizrahi, Orel, Ahdout, Joshua, Mujumdar, Mayuresh, Doron-Mandel, Ella, Jovanovic, Marko, Yeo, Gene W.
Published in Molecular cell (03.10.2024)
Published in Molecular cell (03.10.2024)
Get full text
Journal Article
Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution
Jagannatha, Pratibha, Tankka, Alexandra T, Lorenz, Daniel A, Yu, Tao, Yee, Brian A, Brannan, Kristopher W, Zhou, Catherine Jiarui, Underwood, Jason G, Yeo, Gene W
Published in Genome research (21.06.2024)
Published in Genome research (21.06.2024)
Get full text
Journal Article
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions
Xiang, Joy S, Mueller, Jasmine R, Luo, En-Ching, Yee, Brian A, Schafer, Danielle, Schmok, Jonathan C, Tan, Frederick E, Rothamel, Katherine, McVicar, Rachael N, Kwong, Elizabeth M, Jones, Krysten L, Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q, Jin, Wenhao, Park, Samuel S, Le, Phuong, Brannan, Kristopher W, Kofman, Eric R, Li, Yanhua, Tankka, Alexandra T, Dong, Kevin D, Song, Yan, Carlin, Aaron F, Van Nostrand, Eric L, Leibel, Sandra L, Yeo, Gene W
Published in bioRxiv (23.02.2022)
Published in bioRxiv (23.02.2022)
Get full text
Journal Article
Paper
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions
Yeo, Gene, Xiang, Joy, Mueller, Jasmine, Luo, En-Ching, Yee, Brian, Schafer, Danielle, Schmok, Jonathan, Tan, Frederick, Rothamel, Katherine, McVicar, Rachael, Kwong, Elizabeth, Croker, Ben, Jones, Krysten, Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony, Jin, Wenhao, Park, Samuel, Le, Phuong, Brennan, Kristopher, Kofman, Eric, Li, Yanhua, Tankka, Alexandra, Dong, Kevin, Song, Yan, Clark, Alex, Carlin, Aaron, Nostrand, Eric Van, Leibel, Sandra
Published in Research square (17.03.2022)
Published in Research square (17.03.2022)
Get more information
Journal Article
Abstract 1558: Deciphering the role of ribosomal paralogs RPL39/RPL39L in metaplastic breast cancer
Chervo, Maria F., li, Main, Mancino, Chiara, Martinez, Karina A. Ortega, Shah, Vrutant V., Qian, Wei, Zhou, Jianying, Guzman-Rojas, Liliana, Matre, Polina, Taraballi, Francesca, Brannan, Kristopher W., Chang, Jenny C.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Get full text
Journal Article
METHODS AND USE OF CHIMERIC PROTEINS
Marina, Ryan, Lorenz, Daniel A, Yeo, Eugene, Brannan, Kristopher W, Chaim, Isaac A
Year of Publication 04.05.2023
Get full text
Year of Publication 04.05.2023
Patent
HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence
Jin, Wenhao, Brannan, Kristopher W, Kapeli, Katannya, Park, Samuel S, Tan, Hui Qing, Gosztyla, Maya L, Mujumdar, Mayuresh, Ahdout, Joshua, Henroid, Bryce, Rothamel, Katherine, Xiang, Joy S, Wong, Limsoon, Yeo, Gene W
Published in bioRxiv (24.12.2022)
Published in bioRxiv (24.12.2022)
Get full text
Paper