Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Sharon, Gil, Cruz, Nikki Jamie, Kang, Dae-Wook, Gandal, Michael J., Wang, Bo, Kim, Young-Mo, Zink, Erika M., Casey, Cameron P., Taylor, Bryn C., Lane, Christianne J., Bramer, Lisa M., Isern, Nancy G., Hoyt, David W., Noecker, Cecilia, Sweredoski, Michael J., Moradian, Annie, Borenstein, Elhanan, Jansson, Janet K., Knight, Rob, Metz, Thomas O., Lois, Carlos, Geschwind, Daniel H., Krajmalnik-Brown, Rosa, Mazmanian, Sarkis K.
Published in Cell (30.05.2019)
Published in Cell (30.05.2019)
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Journal Article
ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data
Bramer, Lisa M, White, Amanda M, Stratton, Kelly G, Thompson, Allison M, Claborne, Daniel, Hofmockel, Kirsten, McCue, Lee Ann
Published in PLoS computational biology (16.03.2020)
Published in PLoS computational biology (16.03.2020)
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Journal Article
Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
Piehowski, Paul D., Zhu, Ying, Bramer, Lisa M., Stratton, Kelly G., Zhao, Rui, Orton, Daniel J., Moore, Ronald J., Yuan, Jia, Mitchell, Hugh D., Gao, Yuqian, Webb-Robertson, Bobbie-Jo M., Dey, Sudhansu K., Kelly, Ryan T., Burnum-Johnson, Kristin E.
Published in Nature communications (07.01.2020)
Published in Nature communications (07.01.2020)
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Journal Article
Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis
Challacombe, Jean F, Hesse, Cedar N, Bramer, Lisa M, McCue, Lee Ann, Lipton, Mary, Purvine, Samuel, Nicora, Carrie, Gallegos-Graves, La Verne, Porras-Alfaro, Andrea, Kuske, Cheryl R
Published in BMC genomics (12.12.2019)
Published in BMC genomics (12.12.2019)
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Journal Article
Dynamics of the human gut microbiome in inflammatory bowel disease
Halfvarson, Jonas, Brislawn, Colin J., Lamendella, Regina, Vázquez-Baeza, Yoshiki, Walters, William A., Bramer, Lisa M., D'Amato, Mauro, Bonfiglio, Ferdinando, McDonald, Daniel, Gonzalez, Antonio, McClure, Erin E., Dunklebarger, Mitchell F., Knight, Rob, Jansson, Janet K.
Published in Nature microbiology (13.02.2017)
Published in Nature microbiology (13.02.2017)
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Journal Article
Hypergraph models of biological networks to identify genes critical to pathogenic viral response
Feng, Song, Heath, Emily, Jefferson, Brett, Joslyn, Cliff, Kvinge, Henry, Mitchell, Hugh D., Praggastis, Brenda, Eisfeld, Amie J., Sims, Amy C., Thackray, Larissa B., Fan, Shufang, Walters, Kevin B., Halfmann, Peter J., Westhoff-Smith, Danielle, Tan, Qing, Menachery, Vineet D., Sheahan, Timothy P., Cockrell, Adam S., Kocher, Jacob F., Stratton, Kelly G., Heller, Natalie C., Bramer, Lisa M., Diamond, Michael S., Baric, Ralph S., Waters, Katrina M., Kawaoka, Yoshihiro, McDermott, Jason E., Purvine, Emilie
Published in BMC bioinformatics (29.05.2021)
Published in BMC bioinformatics (29.05.2021)
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Journal Article
Impact of acute temperature and air pollution exposures on adult lung function: A panel study of asthmatics
Evoy, Richard, Kincl, Laurel, Rohlman, Diana, Bramer, Lisa M, Dixon, Holly M, Hystad, Perry, Bae, Harold, Barton, Michael, Phillips, Aaron, Miller, Rachel L, Waters, Katrina M, Herbstman, Julie B, Anderson, Kim A
Published in PloS one (28.06.2022)
Published in PloS one (28.06.2022)
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Journal Article
A global lipid map defines a network essential for Zika virus replication
Leier, Hans C., Weinstein, Jules B., Kyle, Jennifer E., Lee, Joon-Yong, Bramer, Lisa M., Stratton, Kelly G., Kempthorne, Douglas, Navratil, Aaron R., Tafesse, Endale G., Hornemann, Thorsten, Messer, William B., Dennis, Edward A., Metz, Thomas O., Barklis, Eric, Tafesse, Fikadu G.
Published in Nature communications (21.07.2020)
Published in Nature communications (21.07.2020)
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Journal Article
A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants
Farley, Scotland E., Kyle, Jennifer E., Leier, Hans C., Bramer, Lisa M., Weinstein, Jules B., Bates, Timothy A., Lee, Joon-Yong, Metz, Thomas O., Schultz, Carsten, Tafesse, Fikadu G.
Published in Nature communications (17.06.2022)
Published in Nature communications (17.06.2022)
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Journal Article
Strong mineralogic control of soil organic matter composition in response to nutrient addition across diverse grassland sites
Zhao, Qian, Callister, Stephen J., Thompson, Allison M., Kukkadapu, Ravi K., Tfaily, Malak M., Bramer, Lisa M., Qafoku, Nikolla P., Bell, Sheryl L., Hobbie, Sarah E., Seabloom, Eric W., Borer, Elizabeth T., Hofmockel, Kirsten S.
Published in The Science of the total environment (20.09.2020)
Published in The Science of the total environment (20.09.2020)
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Journal Article
21st century United States emissions mitigation could increase water stress more than the climate change it is mitigating
Hejazi, Mohamad I., Voisin, Nathalie, Liu, Lu, Bramer, Lisa M., Fortin, Daniel C., Hathaway, John E., Huang, Maoyi, Kyle, Page, Leung, L. Ruby, Li, Hong-Yi, Liu, Ying, Patel, Pralit L., Pulsipher, Trenton C., Rice, Jennie S., Tesfa, Teklu K., Vernon, Chris R., Zhou, Yuyu
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2015)
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Journal Article
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?
Plubell, Deanna L., Käll, Lukas, Webb-Robertson, Bobbie-Jo, Bramer, Lisa M., Ives, Ashley, Kelleher, Neil L., Smith, Lloyd M., Montine, Thomas J., Wu, Christine C., MacCoss, Michael J.
Published in Journal of proteome research (01.04.2022)
Published in Journal of proteome research (01.04.2022)
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Journal Article
Spatial access and resource limitations control carbon mineralization in soils
Patel, Kaizad F., Smith, A. Peyton, Bond-Lamberty, Ben, Fansler, Sarah J., Tfaily, Malak M., Bramer, Lisa, Varga, Tamas, Bailey, Vanessa L.
Published in Soil biology & biochemistry (01.11.2021)
Published in Soil biology & biochemistry (01.11.2021)
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Journal Article
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data
Degnan, David J., Lewis, Logan A., Bramer, Lisa M., McCue, Lee Ann, Pesavento, James J., Zhou, Mowei, Bilbao, Aivett
Published in Journal of proteome research (02.08.2024)
Published in Journal of proteome research (02.08.2024)
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Journal Article
Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images
Oostrom, Marjolein, Muniak, Michael A, Eichler West, Rogene M, Akers, Sarah, Pande, Paritosh, Obiri, Moses, Wang, Wei, Bowyer, Kasey, Wu, Zhuhao, Bramer, Lisa M, Mao, Tianyi, Webb-Robertson, Bobbie Jo M
Published in PloS one (29.03.2024)
Published in PloS one (29.03.2024)
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Journal Article
A Review of Imputation Strategies for Isobaric Labeling-Based Shotgun Proteomics
Bramer, Lisa M, Irvahn, Jan, Piehowski, Paul D, Rodland, Karin D, Webb-Robertson, Bobbie-Jo M
Published in Journal of proteome research (01.01.2021)
Published in Journal of proteome research (01.01.2021)
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Journal Article
Evaluating predictive relationships between wristbands and urine for assessment of personal PAH exposure
Dixon, Holly M., Bramer, Lisa M., Scott, Richard P., Calero, Lehyla, Holmes, Darrell, Gibson, Elizabeth A., Cavalier, Haleigh M., Rohlman, Diana, Miller, Rachel L., Calafat, Antonia M., Kincl, Laurel, Waters, Katrina M., Herbstman, Julie B., Anderson, Kim A.
Published in Environment international (01.05.2022)
Published in Environment international (01.05.2022)
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