Nuclear stability and transcriptional directionality separate functionally distinct RNA species
Andersson, Robin, Refsing Andersen, Peter, Valen, Eivind, Core, Leighton J, Bornholdt, Jette, Boyd, Mette, Heick Jensen, Torben, Sandelin, Albin
Published in Nature communications (12.11.2014)
Published in Nature communications (12.11.2014)
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Journal Article
Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality
Ntini, Evgenia, Järvelin, Aino I, Bornholdt, Jette, Chen, Yun, Boyd, Mette, Jørgensen, Mette, Andersson, Robin, Hoof, Ilka, Schein, Aleks, Andersen, Peter R, Andersen, Pia K, Preker, Pascal, Valen, Eivind, Zhao, Xiaobei, Pelechano, Vicent, Steinmetz, Lars M, Sandelin, Albin, Jensen, Torben Heick
Published in Nature structural & molecular biology (01.08.2013)
Published in Nature structural & molecular biology (01.08.2013)
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Journal Article
Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
Boyd, Mette, Thodberg, Malte, Vitezic, Morana, Bornholdt, Jette, Vitting-Seerup, Kristoffer, Chen, Yun, Coskun, Mehmet, Li, Yuan, Lo, Bobby Zhao Sheng, Klausen, Pia, Jan Schweiger, Pawel, Pedersen, Anders Gorm, Rapin, Nicolas, Skovgaard, Kerstin, Dahlgaard, Katja, Andersson, Robin, Terkelsen, Thilde Bagger, Lilje, Berit, Troelsen, Jesper Thorvald, Petersen, Andreas Munk, Jensen, Kim Bak, Gögenur, Ismail, Thielsen, Peter, Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Bjerrum, Jacob Tveiten, Sandelin, Albin
Published in Nature communications (25.04.2018)
Published in Nature communications (25.04.2018)
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Journal Article
The Adipose Transcriptional Response to Insulin Is Determined by Obesity, Not Insulin Sensitivity
Rydén, Mikael, Hrydziuszko, Olga, Mileti, Enrichetta, Raman, Amitha, Bornholdt, Jette, Boyd, Mette, Toft, Eva, Qvist, Veronica, Näslund, Erik, Thorell, Anders, Andersson, Daniel P., Dahlman, Ingrid, Gao, Hui, Sandelin, Albin, Daub, Carsten O., Arner, Peter
Published in Cell reports (Cambridge) (30.08.2016)
Published in Cell reports (Cambridge) (30.08.2016)
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Journal Article
Regulating retrotransposon activity through the use of alternative transcription start sites
Persson, Jenna, Steglich, Babett, Smialowska, Agata, Boyd, Mette, Bornholdt, Jette, Andersson, Robin, Schurra, Catherine, Arcangioli, Benoit, Sandelin, Albin, Nielsen, Olaf, Ekwall, Karl
Published in EMBO reports (01.05.2016)
Published in EMBO reports (01.05.2016)
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Journal Article
Mapping of HNF4α target genes in intestinal epithelial cells
Boyd, Mette, Bressendorff, Simon, Møller, Jette, Olsen, Jørgen, Troelsen, Jesper T
Published in BMC gastroenterology (17.09.2009)
Published in BMC gastroenterology (17.09.2009)
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Journal Article
Relation between NOD2 genotype and changes in innate signaling in Crohn's disease on mRNA and miRNA levels
Chen, Yun, Salem, Mohammad, Boyd, Mette, Bornholdt, Jette, Li, Yuan, Coskun, Mehmet, Seidelin, Jakob Benedict, Sandelin, Albin, Nielsen, Ole Haagen
Published in Npj genomic medicine (08.02.2017)
Published in Npj genomic medicine (08.02.2017)
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Journal Article
A new class of genic nuclear RNA species in Arabidopsis
Wonterghem, Miranda, Thieffry, Axel, Boyd, Mette, Bornholdt, Jette, Brodersen, Peter
Published in FEBS letters (01.02.2018)
Published in FEBS letters (01.02.2018)
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Journal Article
Comprehensive profiling of the fission yeast transcription start site activity during stress and media response
Thodberg, Malte, Thieffry, Axel, Bornholdt, Jette, Boyd, Mette, Holmberg, Christian, Azad, Ajuna, Workman, Christopher T, Chen, Yun, Ekwall, Karl, Nielsen, Olaf, Sandelin, Albin
Published in Nucleic acids research (28.02.2019)
Published in Nucleic acids research (28.02.2019)
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Journal Article
Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo
Bornholdt, Jette, Saber, Anne Thoustrup, Lilje, Berit, Boyd, Mette, Jørgensen, Mette, Chen, Yun, Vitezic, Morana, Jacobsen, Nicklas Raun, Poulsen, Sarah Søs, Berthing, Trine, Bressendorff, Simon, Vitting-Seerup, Kristoffer, Andersson, Robin, Hougaard, Karin Sørig, Yauk, Carole L, Halappanavar, Sabina, Wallin, Håkan, Vogel, Ulla, Sandelin, Albin
Published in ACS nano (25.04.2017)
Published in ACS nano (25.04.2017)
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Journal Article
Current and emerging approaches to define intestinal epithelium-specific transcriptional networks
Olsen, Anders Krüger, Boyd, Mette, Danielsen, Erik Thomas, Troelsen, Jesper Thorvald
Published in American journal of physiology: Gastrointestinal and liver physiology (01.02.2012)
Published in American journal of physiology: Gastrointestinal and liver physiology (01.02.2012)
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Journal Article
Genome-wide Analysis of CDX2 Binding in Intestinal Epithelial Cells (Caco-2)
Boyd, Mette, Hansen, Morten, Jensen, Tine G.K., Perearnau, Anna, Olsen, Anders K., Bram, Lotte L., Bak, Mads, Tommerup, Niels, Olsen, Jørgen, Troelsen, Jesper T.
Published in The Journal of biological chemistry (13.08.2010)
Published in The Journal of biological chemistry (13.08.2010)
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Journal Article
Su1189 Genome-Wide Discovery of Inflammatory Bowel Disease-Specific Transcriptional Enhancers and Promoters Identifies Powerful Diagnostic Biomarkers
Vitezic, Morana, Boyd, Mette, Bornholdt, Jette, Coskun, Mehmet, Thodberg, Malte, Andersson, Robin, Troelsen, Jesper, Bjerrum, Jacob T, Nielsen, Ole H, Sandelin, Albin
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2015)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2015)
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Journal Article
Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2
Boyd, Mette, Coskun, Mehmet, Lilje, Berit, Andersson, Robin, Hoof, Ilka, Bornholdt, Jette, Dahlgaard, Katja, Olsen, Jørgen, Vitezic, Morana, Bjerrum, Jacob Tveiten, Seidelin, Jakob Benedict, Nielsen, Ole Haagen, Troelsen, Jesper Thorvald, Sandelin, Albin
Published in DNA research (01.12.2014)
Published in DNA research (01.12.2014)
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Journal Article
Current and emerging approaches to define intestinal epithelium-specific transcriptional networks
KRIIGER OLSEN, Anders, BOYD, Mette, THOMAS DANIELSEN, Erik, THORVALD TROELSEN, Jesper
Published in American journal of physiology: Gastrointestinal and liver physiology (2012)
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Published in American journal of physiology: Gastrointestinal and liver physiology (2012)
Journal Article
Preaxial polydactyly/triphalangeal thumb is associated with changed transcription factor-binding affinity in a family with a novel point mutation in the long-range cis-regulatory element ZRS
FAROOQ, Muhammad, TROELSEN, Jesper T, TOMMERUP, Niels, SHAHID MAHMOOD BAIG, KJAER, Klaus W, BOYD, Mette, EIBERG, Hans, HANSEN, Lars, MUHAMMAD SAJID HUSSAIN, SHOAIB UR REHMAN, AZHAR, Aysha, ALI, Amjad, SYEDA MARRIAM BAKHTIAR
Published in European journal of human genetics : EJHG (01.06.2010)
Published in European journal of human genetics : EJHG (01.06.2010)
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Journal Article
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
Ienasescu, Hans, Li, Kang, Andersson, Robin, Vitezic, Morana, Rennie, Sarah, Chen, Yun, Vitting-Seerup, Kristoffer, Lagoni, Emil, Boyd, Mette, Bornholdt, Jette, de Hoon, Michiel J L, Kawaji, Hideya, Lassmann, Timo, Hayashizaki, Yoshihide, Forrest, Alistair R R, Carninci, Piero, Sandelin, Albin
Published in Database : the journal of biological databases and curation (01.01.2016)
Published in Database : the journal of biological databases and curation (01.01.2016)
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Journal Article
Mapping of HNF4[alpha] target genes in intestinal epithelial cells
Boyd, Mette, Bressendorff, Simon, Møller, Jette, Olsen, Jørgen, Troelsen, Jesper T
Published in BMC gastroenterology (17.09.2009)
Published in BMC gastroenterology (17.09.2009)
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Journal Article