Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract
Kommineni, Sushma, Bretl, Daniel J, Lam, Vy, Chakraborty, Rajrupa, Hayward, Michael, Simpson, Pippa, Cao, Yumei, Bousounis, Pavlos, Kristich, Christopher J, Salzman, Nita H
Published in Nature (London) (29.10.2015)
Published in Nature (London) (29.10.2015)
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Journal Article
Inflammation, Aging and Hematopoiesis: A Complex Relationship
Bousounis, Pavlos, Bergo, Veronica, Trompouki, Eirini
Published in Cells (Basel, Switzerland) (04.06.2021)
Published in Cells (Basel, Switzerland) (04.06.2021)
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SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data
Prashant, N M, Alomran, Nawaf, Chen, Yu, Liu, Hongyu, Bousounis, Pavlos, Movassagh, Mercedeh, Edwards, Nathan, Horvath, Anelia
Published in BMC genomics (22.09.2021)
Published in BMC genomics (22.09.2021)
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Journal Article
scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets
Liu, Hongyu, Prashant, N M, Spurr, Liam F, Bousounis, Pavlos, Alomran, Nawaf, Ibeawuchi, Helen, Sein, Justin, Słowiński, Piotr, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Published in BMC genomics (08.01.2021)
Published in BMC genomics (08.01.2021)
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Journal Article
Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data
M, Prashant N, Liu, Hongyu, Bousounis, Pavlos, Spurr, Liam, Alomran, Nawaf, Ibeawuchi, Helen, Sein, Justin, Reece-Stremtan, Dacian, Horvath, Anelia
Published in Genes (25.02.2020)
Published in Genes (25.02.2020)
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Journal Article
Paneth cell defects in Crohn's disease patients promote dysbiosis
Liu, Ta-Chiang, Gurram, Bhaskar, Baldridge, Megan T, Head, Richard, Lam, Vy, Luo, Chengwei, Cao, Yumei, Simpson, Pippa, Hayward, Michael, Holtz, Mary L, Bousounis, Pavlos, Noe, Joshua, Lerner, Diana, Cabrera, Jose, Biank, Vincent, Stephens, Michael, Huttenhower, Curtis, McGovern, Dermot Pb, Xavier, Ramnik J, Stappenbeck, Thaddeus S, Salzman, Nita H
Published in JCI insight (02.06.2016)
Published in JCI insight (02.06.2016)
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Journal Article
ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data
Spurr, Liam F, Alomran, Nawaf, Bousounis, Pavlos, Reece-Stremtan, Dacian, Prashant, N M, Liu, Hongyu, Słowiński, Piotr, Li, Muzi, Zhang, Qianqian, Sein, Justin, Asher, Gabriel, Crandall, Keith A, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Published in Bioinformatics (01.03.2020)
Published in Bioinformatics (01.03.2020)
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Journal Article
Bacteriocin production augments niche competition by enterococci in the mammalian GI tract
Kommineni, Sushma, Bretl, Daniel J., Lam, Vy, Chakraborty, Rajrupa, Hayward, Michael, Simpson, Pippa, Cao, Yumei, Bousounis, Pavlos, Kristich, Christopher J., Salzman, Nita H.
Published in Nature (London) (19.10.2015)
Published in Nature (London) (19.10.2015)
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Journal Article
P-236 Paneth Cell Gene Expression and Dysbiosis in Pediatric Crohn’s Disease Patients
Gurram, Bhaskar, Stephens, Michael, Lam, Vy, Hayward, Michael, Bousounis, Pavlos, Broeckel, Ulrich, Worthey, Elizabeth, Simpson, Pippa, Salzman, Nita
Published in Inflammatory bowel diseases (01.12.2013)
Published in Inflammatory bowel diseases (01.12.2013)
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Journal Article
scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets
Liu, Hongyu, Nm Prashant, Spurr, Liam, Bousounis, Pavlos, Alomran, Nawaf, Ibeawuchi, Helen, Sein, Justin, Slowinski, Piotr M, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Published in bioRxiv (14.07.2020)
Published in bioRxiv (14.07.2020)
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Paper
ReQTL - an allele-level measure of variation-expression genomic relationships
Spurr, Liam, Alomran, Nawaf, Slowinski, Piotr, Li, Muzi, Bousounis, Pavlos, Zhang, Qianqian, Sein, Justin, Crandall, Keith A, Tsaneva-Atanasova, Krasimira, Horvath, Anelia
Published in bioRxiv (07.11.2018)
Published in bioRxiv (07.11.2018)
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