Reproducible molecular networking of untargeted mass spectrometry data using GNPS
Aron, Allegra T., Gentry, Emily C., McPhail, Kerry L., Nothias, Louis-Félix, Nothias-Esposito, Mélissa, Bouslimani, Amina, Petras, Daniel, Gauglitz, Julia M., Sikora, Nicole, Vargas, Fernando, van der Hooft, Justin J. J., Ernst, Madeleine, Kang, Kyo Bin, Aceves, Christine M., Caraballo-Rodríguez, Andrés Mauricio, Koester, Irina, Weldon, Kelly C., Bertrand, Samuel, Roullier, Catherine, Sun, Kunyang, Tehan, Richard M., Boya P., Cristopher A., Christian, Martin H., Gutiérrez, Marcelino, Ulloa, Aldo Moreno, Tejeda Mora, Javier Andres, Mojica-Flores, Randy, Lakey-Beitia, Johant, Vásquez-Chaves, Victor, Zhang, Yilue, Calderón, Angela I., Tayler, Nicole, Keyzers, Robert A., Tugizimana, Fidele, Ndlovu, Nombuso, Aksenov, Alexander A., Jarmusch, Alan K., Schmid, Robin, Truman, Andrew W., Bandeira, Nuno, Wang, Mingxun, Dorrestein, Pieter C.
Published in Nature protocols (01.06.2020)
Published in Nature protocols (01.06.2020)
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Journal Article
Mass spectrometry of natural products: current, emerging and future technologies
Bouslimani, Amina, Sanchez, Laura M, Garg, Neha, Dorrestein, Pieter C
Published in Natural product reports (01.01.2014)
Published in Natural product reports (01.01.2014)
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Journal Article
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery
Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein
Published in Nature communications (28.05.2021)
Published in Nature communications (28.05.2021)
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Journal Article
Molecular cartography of the human skin surface in 3D
Bouslimani, Amina, Porto, Carla, Rath, Christopher M., Wang, Mingxun, Guo, Yurong, Gonzalez, Antonio, Berg-Lyon, Donna, Ackermann, Gail, Christensen, Gitte Julie Moeller, Nakatsuji, Teruaki, Zhang, Lingjuan, Borkowski, Andrew W., Meehan, Michael J., Dorrestein, Kathleen, Gallo, Richard L., Bandeira, Nuno, Knight, Rob, Alexandrov, Theodore, Dorrestein, Pieter C.
Published in Proceedings of the National Academy of Sciences - PNAS (28.04.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (28.04.2015)
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Journal Article
3D molecular cartography using LC–MS facilitated by Optimus and 'ili software
Protsyuk, Ivan, Melnik, Alexey V, Nothias, Louis-Felix, Rappez, Luca, Phapale, Prasad, Aksenov, Alexander A, Bouslimani, Amina, Ryazanov, Sergey, Dorrestein, Pieter C, Alexandrov, Theodore
Published in Nature protocols (01.01.2018)
Published in Nature protocols (01.01.2018)
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Journal Article
The impact of skin care products on skin chemistry and microbiome dynamics
Bouslimani, Amina, da Silva, Ricardo, Kosciolek, Tomasz, Janssen, Stefan, Callewaert, Chris, Amir, Amnon, Dorrestein, Kathleen, Melnik, Alexey V, Zaramela, Livia S, Kim, Ji-Nu, Humphrey, Gregory, Schwartz, Tara, Sanders, Karenina, Brennan, Caitriona, Luzzatto-Knaan, Tal, Ackermann, Gail, McDonald, Daniel, Zengler, Karsten, Knight, Rob, Dorrestein, Pieter C
Published in BMC biology (12.06.2019)
Published in BMC biology (12.06.2019)
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Journal Article
Home chemical and microbial transitions across urbanization
McCall, Laura-Isobel, Callewaert, Chris, Zhu, Qiyun, Song, Se Jin, Bouslimani, Amina, Minich, Jeremiah J., Ernst, Madeleine, Ruiz-Calderon, Jean F., Cavallin, Humberto, Pereira, Henrique S., Novoselac, Atila, Hernandez, Jean, Rios, Rafael, Branch, OraLee H., Blaser, Martin J., Paulino, Luciana C., Dorrestein, Pieter C., Knight, Rob, Dominguez-Bello, Maria G.
Published in Nature microbiology (01.01.2020)
Published in Nature microbiology (01.01.2020)
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Journal Article
Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples
Melnik, Alexey V, da Silva, Ricardo R, Hyde, Embriette R, Aksenov, Alexander A, Vargas, Fernando, Bouslimani, Amina, Protsyuk, Ivan, Jarmusch, Alan K, Tripathi, Anupriya, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C
Published in Analytical chemistry (Washington) (18.07.2017)
Published in Analytical chemistry (Washington) (18.07.2017)
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Journal Article
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
Gauglitz, Julia M., Aceves, Christine M., Aksenov, Alexander A., Aleti, Gajender, Almaliti, Jehad, Bouslimani, Amina, Brown, Elizabeth A., Campeau, Anaamika, Caraballo-Rodríguez, Andrés Mauricio, Chaar, Rama, da Silva, Ricardo R., Demko, Alyssa M., Di Ottavio, Francesca, Elijah, Emmanuel, Ernst, Madeleine, Ferguson, L. Paige, Holmes, Xavier, Jarmusch, Alan K., Jiang, Lingjing, Kang, Kyo Bin, Koester, Irina, Kwan, Brian, Li, Jie, Li, Yueying, Melnik, Alexey V., Molina-Santiago, Carlos, Ni, Bohan, Oom, Aaron L., Panitchpakdi, Morgan W., Petras, Daniel, Quinn, Robert, Sikora, Nicole, Spengler, Katharina, Teke, Bahar, Tripathi, Anupriya, Ul-Hasan, Sabah, van der Hooft, Justin J.J., Vargas, Fernando, Vrbanac, Alison, Vu, Anthony Q., Wang, Steven C., Weldon, Kelly, Wilson, Kayla, Wozniak, Jacob M., Yoon, Michael, Bandeira, Nuno, Dorrestein, Pieter C.
Published in Food chemistry (01.01.2020)
Published in Food chemistry (01.01.2020)
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Journal Article
Lifestyle chemistries from phones for individual profiling
Bouslimani, Amina, Melnik, Alexey V., Xu, Zhenjiang, Amir, Amnon, da Silva, Ricardo R., Wang, Mingxun, Bandeira, Nuno, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2016)
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Journal Article
Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery
Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein
Published in Nature communications (08.07.2021)
Published in Nature communications (08.07.2021)
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Journal Article
Matrix-assisted laser desorption/ionization imaging mass spectrometry of oxaliplatin derivatives in heated intraoperative chemotherapy (HIPEC)-like treated rat kidney
Bouslimani, Amina, Bec, Nicole, Glueckmann, Matthias, Hirtz, Christophe, Larroque, Christian
Published in Rapid communications in mass spectrometry (01.02.2010)
Published in Rapid communications in mass spectrometry (01.02.2010)
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Journal Article
A multi-study analysis enables identification of potential microbial features associated with skin aging signs
Myers, Tyler, Bouslimani, Amina, Huang, Shi, Hansen, Shalisa T, Clavaud, Cécile, Azouaoui, Anissa, Ott, Alban, Gueniche, Audrey, Bouez, Charbel, Zheng, Qian, Aguilar, Luc, Knight, Rob, Moreau, Magali, Song, Se Jin
Published in Frontiers in aging (11.01.2024)
Published in Frontiers in aging (11.01.2024)
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Journal Article
Advances in Microbiome-Derived Solutions and Methodologies Are Founding a New Era in Skin Health and Care
Gueniche, Audrey, Perin, Olivier, Bouslimani, Amina, Landemaine, Leslie, Misra, Namita, Cupferman, Sylvie, Aguilar, Luc, Clavaud, Cécile, Chopra, Tarun, Khodr, Ahmad
Published in Pathogens (Basel) (20.01.2022)
Published in Pathogens (Basel) (20.01.2022)
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Journal Article
Complementarity of MALDI and LA ICP mass spectrometry for platinum anticancer imaging in human tumor
Bianga, Juliusz, Bouslimani, Amina, Bec, Nicole, Quenet, François, Mounicou, Sandra, Szpunar, Joanna, Bouyssiere, Brice, Lobinski, Ryszard, Larroque, Christian
Published in Metallomics (01.01.2014)
Published in Metallomics (01.01.2014)
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Journal Article
Microbiome Tools for Forensic Science
Metcalf, Jessica L, Xu, Zhenjiang Z, Bouslimani, Amina, Dorrestein, Pieter, Carter, David O, Knight, Rob
Published in Trends in biotechnology (Regular ed.) (01.09.2017)
Published in Trends in biotechnology (Regular ed.) (01.09.2017)
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Journal Article
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
Nakatsuji, Teruaki, Chen, Tiffany H, Narala, Saisindhu, Chun, Kimberly A, Two, Aimee M, Yun, Tong, Shafiq, Faiza, Kotol, Paul F, Bouslimani, Amina, Melnik, Alexey V, Latif, Haythem, Kim, Ji-Nu, Lockhart, Alexandre, Artis, Keli, David, Gloria, Taylor, Patricia, Streib, Joanne, Dorrestein, Pieter C, Grier, Alex, Gill, Steven R, Zengler, Karsten, Hata, Tissa R, Leung, Donald Y M, Gallo, Richard L
Published in Science translational medicine (22.02.2017)
Published in Science translational medicine (22.02.2017)
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Journal Article
54122 MICROBIOME MARKERS OF SKIN AGING: TOWARDS NEW ANTI-AGING STRATEGIES
Bouslimani, Amina, Myers, Tyler, Huang, Shi, Clavaud, Cécile, Ott, Alban, Zheng, Qian, Knight, Rob, Moreau, Magali, Song, Se Jin
Published in Journal of the American Academy of Dermatology (01.09.2024)
Published in Journal of the American Academy of Dermatology (01.09.2024)
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Journal Article
ReDU: a framework to find and reanalyze public mass spectrometry data
Jarmusch, Alan K., Wang, Mingxun, Aceves, Christine M., Advani, Rohit S., Aguirre, Shaden, Aksenov, Alexander A., Aleti, Gajender, Aron, Allegra T., Bauermeister, Anelize, Bolleddu, Sanjana, Bouslimani, Amina, Caraballo Rodriguez, Andres Mauricio, Chaar, Rama, Coras, Roxana, Elijah, Emmanuel O., Ernst, Madeleine, Gauglitz, Julia M., Gentry, Emily C., Husband, Makhai, Jarmusch, Scott A., Jones, Kenneth L., Kamenik, Zdenek, Le Gouellec, Audrey, Lu, Aileen, McCall, Laura-Isobel, McPhail, Kerry L., Meehan, Michael J., Melnik, Alexey V., Menezes, Riya C., Montoya Giraldo, Yessica Alejandra, Nguyen, Ngoc Hung, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Panitchpakdi, Morgan, Petras, Daniel, Quinn, Robert A., Sikora, Nicole, van der Hooft, Justin J. J., Vargas, Fernando, Vrbanac, Alison, Weldon, Kelly C., Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C.
Published in Nature methods (01.09.2020)
Published in Nature methods (01.09.2020)
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Journal Article
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung
Garg, Neha, Wang, Mingxun, Hyde, Embriette, da Silva, Ricardo R., Melnik, Alexey V., Protsyuk, Ivan, Bouslimani, Amina, Lim, Yan Wei, Wong, Richard, Humphrey, Greg, Ackermann, Gail, Spivey, Timothy, Brouha, Sharon S., Bandeira, Nuno, Lin, Grace Y., Rohwer, Forest, Conrad, Douglas J., Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Published in Cell host & microbe (08.11.2017)
Published in Cell host & microbe (08.11.2017)
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Journal Article