DRAM for distilling microbial metabolism to automate the curation of microbiome function
Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Published in Nucleic acids research (18.09.2020)
Published in Nucleic acids research (18.09.2020)
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Journal Article
Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions
Angle, Jordan C, Morin, Timothy H, Solden, Lindsey M, Narrowe, Adrienne B, Smith, Garrett J, Borton, Mikayla A, Rey-Sanchez, Camilo, Daly, Rebecca A, Mirfenderesgi, Golnazalsdat, Hoyt, David W, Riley, William J, Miller, Christopher S, Bohrer, Gil, Wrighton, Kelly C
Published in Nature communications (16.11.2017)
Published in Nature communications (16.11.2017)
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Journal Article
Decrypting bacterial polyphenol metabolism in an anoxic wetland soil
McGivern, Bridget B, Tfaily, Malak M, Borton, Mikayla A, Kosina, Suzanne M, Daly, Rebecca A, Nicora, Carrie D, Purvine, Samuel O, Wong, Allison R, Lipton, Mary S, Hoyt, David W, Northen, Trent R, Hagerman, Ann E, Wrighton, Kelly C
Published in Nature communications (29.04.2021)
Published in Nature communications (29.04.2021)
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Journal Article
Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome
Borton, Mikayla A, Sabag-Daigle, Anice, Wu, Jikang, Solden, Lindsey M, O'Banion, Bridget S, Daly, Rebecca A, Wolfe, Richard A, Gonzalez, Juan F, Wysocki, Vicki H, Ahmer, Brian M M, Wrighton, Kelly C
Published in Microbiome (27.04.2017)
Published in Microbiome (27.04.2017)
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Journal Article
Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
Dalcin Martins, Paula, Danczak, Robert E, Roux, Simon, Frank, Jeroen, Borton, Mikayla A, Wolfe, Richard A, Burris, Marie N, Wilkins, Michael J
Published in Microbiome (07.08.2018)
Published in Microbiome (07.08.2018)
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Journal Article
Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
Daly, Rebecca A, Borton, Mikayla A, Wilkins, Michael J, Hoyt, David W, Kountz, Duncan J, Wolfe, Richard A, Welch, Susan A, Marcus, Daniel N, Trexler, Ryan V, MacRae, Jean D, Krzycki, Joseph A, Cole, David R, Mouser, Paula J, Wrighton, Kelly C
Published in Nature microbiology (05.09.2016)
Published in Nature microbiology (05.09.2016)
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Journal Article
Targeted curation of the gut microbial gene content modulating human cardiovascular disease
Borton, Mikayla A, Shaffer, Michael, Hoyt, David W, Jiang, Ruisheng, Ellenbogen, Jared B, Purvine, Samuel, Nicora, Carrie D, Eder, Elizabeth K, Wong, Allison R, Smulian, A George, Lipton, Mary S, Krzycki, Joseph A, Wrighton, Kelly C
Published in mBio (31.10.2023)
Published in mBio (31.10.2023)
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Journal Article
Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation
Amundson, Kaela K, Borton, Mikayla A, Daly, Rebecca A, Hoyt, David W, Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly C, Wilkins, Michael J
Published in Microbiome (16.01.2022)
Published in Microbiome (16.01.2022)
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Journal Article
Exposing new taxonomic variation with inflammation - a murine model-specific genome database for gut microbiome researchers
Leleiwi, Ikaia, Rodriguez-Ramos, Josué, Shaffer, Michael, Sabag-Daigle, Anice, Kokkinias, Katherine, Flynn, Rory M, Daly, Rebecca A, Kop, Linnea F M, Solden, Lindsey M, Ahmer, Brian M M, Borton, Mikayla A, Wrighton, Kelly C
Published in Microbiome (20.05.2023)
Published in Microbiome (20.05.2023)
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Journal Article
Correction to: Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation
Amundson, Kaela K, Borton, Mikayla A, Daly, Rebecca A, Hoyt, David W, Wong, Allison, Eder, Elizabeth, Moore, Joseph, Wunch, Kenneth, Wrighton, Kelly C, Wilkins, Michael J
Published in Microbiome (12.02.2022)
Published in Microbiome (12.02.2022)
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Journal Article
Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
Narrowe, Adrienne B, Borton, Mikayla A, Hoyt, David W, Smith, Garrett J, Daly, Rebecca A, Angle, Jordan C, Eder, Elizabeth K, Wong, Allison R, Wolfe, Richard A, Pappas, Alexandra, Bohrer, Gil, Miller, Christopher S, Wrighton, Kelly C
Published in mSystems (03.12.2019)
Published in mSystems (03.12.2019)
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Journal Article
Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost
Ellenbogen, Jared B, Borton, Mikayla A, McGivern, Bridget B, Cronin, Dylan R, Hoyt, David W, Freire-Zapata, Viviana, McCalley, Carmody K, Varner, Ruth K, Crill, Patrick M, Wehr, Richard A, Chanton, Jeffrey P, Woodcroft, Ben J, Tfaily, Malak M, Tyson, Gene W, Rich, Virginia I, Wrighton, Kelly C
Published in mSystems (23.01.2024)
Published in mSystems (23.01.2024)
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Journal Article
Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments
Rodríguez-Ramos, Josué A, Borton, Mikayla A, McGivern, Bridget B, Smith, Garrett J, Solden, Lindsey M, Shaffer, Michael, Daly, Rebecca A, Purvine, Samuel O, Nicora, Carrie D, Eder, Elizabeth K, Lipton, Mary, Hoyt, David W, Stegen, James C, Wrighton, Kelly C
Published in mSystems (21.07.2022)
Published in mSystems (21.07.2022)
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Journal Article
Clades of huge phages from across Earth's ecosystems
Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J, Olm, Matthew R, Bouma-Gregson, Keith, Amano, Yuki, He, Christine, Méheust, Raphaël, Brooks, Brandon, Thomas, Alex, Lavy, Adi, Matheus-Carnevali, Paula, Sun, Christine, Goltsman, Daniela S A, Borton, Mikayla A, Sharrar, Allison, Jaffe, Alexander L, Nelson, Tara C, Kantor, Rose, Keren, Ray, Lane, Katherine R, Farag, Ibrahim F, Lei, Shufei, Finstad, Kari, Amundson, Ronald, Anantharaman, Karthik, Zhou, Jinglie, Probst, Alexander J, Power, Mary E, Tringe, Susannah G, Li, Wen-Jun, Wrighton, Kelly, Harrison, Sue, Morowitz, Michael, Relman, David A, Doudna, Jennifer A, Lehours, Anne-Catherine, Warren, Lesley, Cate, Jamie H D, Santini, Joanne M, Banfield, Jillian F
Published in Nature (London) (20.02.2020)
Published in Nature (London) (20.02.2020)
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Journal Article
Reusing oil and gas produced water for agricultural irrigation: Effects on soil health and the soil microbiome
Miller, Hannah, Dias, Kandis, Hare, Hannah, Borton, Mikayla A., Blotevogel, Jens, Danforth, Cloelle, Wrighton, Kelly C., Ippolito, James A., Borch, Thomas
Published in The Science of the total environment (20.06.2020)
Published in The Science of the total environment (20.06.2020)
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Journal Article
Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function
Seitz, Valerie A, McGivern, Bridget B, Daly, Rebecca A, Chaparro, Jacqueline M, Borton, Mikayla A, Sheflin, Amy M, Kresovich, Stephen, Shields, Lindsay, Schipanski, Meagan E, Wrighton, Kelly C, Prenni, Jessica E
Published in Applied and environmental microbiology (14.06.2022)
Published in Applied and environmental microbiology (14.06.2022)
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Journal Article
The diversity and evolution of microbial dissimilatory phosphite oxidation
Ewens, Sophia D, Gomberg, Alexa F S, Barnum, Tyler P, Borton, Mikayla A, Carlson, Hans K, Wrighton, Kelly C, Coates, John D
Published in Proceedings of the National Academy of Sciences - PNAS (16.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.03.2021)
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Journal Article
Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
Borton, Mikayla A., Hoyt, David W., Roux, Simon, Daly, Rebecca A., Welch, Susan A., Nicora, Carrie D., Purvine, Samuel, Eder, Elizabeth K., Hanson, Andrea J., Sheets, Julie M., Morgan, David M., Wolfe, Richard A., Sharma, Shikha, Carr, Timothy R., Cole, David R., Mouser, Paula J., Lipton, Mary S., Wilkins, Michael J., Wrighton, Kelly C.
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
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Journal Article
Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
Smith, Garrett J, Angle, Jordan C, Solden, Lindsey M, Borton, Mikayla A, Morin, Timothy H, Daly, Rebecca A, Johnston, Michael D, Stefanik, Kay C, Wolfe, Richard, Gil, Bohrer, Wrighton, Kelly C
Published in mBio (06.11.2018)
Published in mBio (06.11.2018)
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Journal Article
Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments
Pérez Castro, Sherlynette, Borton, Mikayla A, Regan, Kathleen, Hrabe de Angelis, Isabella, Wrighton, Kelly C, Teske, Andreas P, Strous, Marc, Ruff, S Emil
Published in The ISME Journal (01.12.2021)
Published in The ISME Journal (01.12.2021)
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Journal Article