Diversity within species: interpreting strains in microbiomes
Van Rossum, Thea, Ferretti, Pamela, Maistrenko, Oleksandr M., Bork, Peer
Published in Nature reviews. Microbiology (01.09.2020)
Published in Nature reviews. Microbiology (01.09.2020)
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Journal Article
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Huerta-Cepas, Jaime, Serra, François, Bork, Peer
Published in Molecular biology and evolution (01.06.2016)
Published in Molecular biology and evolution (01.06.2016)
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Journal Article
The SIDER database of drugs and side effects
Kuhn, Michael, Letunic, Ivica, Jensen, Lars Juhl, Bork, Peer
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Szklarczyk, Damian, Gable, Annika L, Nastou, Katerina C, Lyon, David, Kirsch, Rebecca, Pyysalo, Sampo, Doncheva, Nadezhda T, Legeay, Marc, Fang, Tao, Bork, Peer, Jensen, Lars J, von Mering, Christian
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Journal Article
Web Resource
Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Journal Article
Extensive impact of non-antibiotic drugs on human gut bacteria
Maier, Lisa, Pruteanu, Mihaela, Kuhn, Michael, Zeller, Georg, Telzerow, Anja, Anderson, Exene Erin, Brochado, Ana Rita, Fernandez, Keith Conrad, Dose, Hitomi, Mori, Hirotada, Patil, Kiran Raosaheb, Bork, Peer, Typas, Athanasios
Published in Nature (London) (29.03.2018)
Published in Nature (London) (29.03.2018)
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Journal Article
Microbial abundance, activity and population genomic profiling with mOTUs2
Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
Published in Nature communications (04.03.2019)
Published in Nature communications (04.03.2019)
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Journal Article
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Huerta-Cepas, Jaime, Szklarczyk, Damian, Heller, Davide, Hernández-Plaza, Ana, Forslund, Sofia K, Cook, Helen, Mende, Daniel R, Letunic, Ivica, Rattei, Thomas, Jensen, Lars J, von Mering, Christian, Bork, Peer
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Metabolic dependencies drive species co-occurrence in diverse microbial communities
Zelezniak, Aleksej, Andrejev, Sergej, Ponomarova, Olga, Mende, Daniel R., Bork, Peer, Patil, Kiran Raosaheb
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2015)
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Journal Article
Selective maternal seeding and environment shape the human gut microbiome
Korpela, Katri, Costea, Paul, Coelho, Luis Pedro, Kandels-Lewis, Stefanie, Willemsen, Gonneke, Boomsma, Dorret I, Segata, Nicola, Bork, Peer
Published in Genome research (01.04.2018)
Published in Genome research (01.04.2018)
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