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Kraneveld, Eefje A, Buijs, Mark J, Bonder, Marc J, Visser, Marjolein, Keijser, Bart J F, Crielaard, Wim, Zaura, Egija
Published in PloS one (10.08.2012)
Published in PloS one (10.08.2012)
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Comparing clustering and pre-processing in taxonomy analysis
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Published in Bioinformatics (15.11.2012)
Published in Bioinformatics (15.11.2012)
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Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases
Cai, Na, Gomez-Duran, Aurora, Yonova-Doing, Ekaterina, Kundu, Kousik, Burgess, Annette I., Golder, Zoe J., Calabrese, Claudia, Bonder, Marc J., Camacho, Marta, Lawson, Rachael A., Li, Lixin, Williams-Gray, Caroline H., Di Angelantonio, Emanuele, Roberts, David J., Watkins, Nick A., Ouwehand, Willem H., Butterworth, Adam S., Stewart, Isobel D., Pietzner, Maik, Wareham, Nick J., Langenberg, Claudia, Danesh, John, Walter, Klaudia, Rothwell, Peter M., Howson, Joanna M. M., Stegle, Oliver, Chinnery, Patrick F., Soranzo, Nicole
Published in Nature medicine (01.09.2021)
Published in Nature medicine (01.09.2021)
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Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats
Jakubosky, David, Smith, Erin N., D’Antonio, Matteo, Jan Bonder, Marc, Young Greenwald, William W., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Stegle, Oliver, Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.
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Published in Nature communications (10.06.2020)
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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk: A Cross-Sectional Study
Kurilshikov, Alexander, van den Munckhof, Inge C.L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H.W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A.B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P.Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan
Published in Circulation research (07.06.2019)
Published in Circulation research (07.06.2019)
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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA1c levels: a systematic review and replication in a case–control sample of the Lifelines study
Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M. W., Bonder, Marc J., Lutgers, Helen L., Snieder, Harold, Wolffenbuttel, Bruce H. R., van Vliet-Ostaptchouk, Jana V.
Published in Diabetologia (01.02.2018)
Published in Diabetologia (01.02.2018)
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Properties of structural variants and short tandem repeats associated with gene expression and complex traits
Jakubosky, David, D’Antonio, Matteo, Bonder, Marc Jan, Smail, Craig, Donovan, Margaret K. R., Young Greenwald, William W., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Stegle, Oliver, Smith, Erin N., Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.
Published in Nature communications (10.06.2020)
Published in Nature communications (10.06.2020)
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Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations
Shah, Sonia, Bonder, Marc J., Marioni, Riccardo E., Zhu, Zhihong, McRae, Allan F., Zhernakova, Alexandra, Harris, Sarah E., Liewald, Dave, Henders, Anjali K., Mendelson, Michael M., Liu, Chunyu, Joehanes, Roby, Liang, Liming, Heijmans, Bastiaan T., ’t Hoen, Peter A.C., van Meurs, Joyce, Isaacs, Aaron, Jansen, Rick, Franke, Lude, Boomsma, Dorret I., Pool, René, van Dongen, Jenny, Hottenga, Jouke J., van Greevenbroek, Marleen M.J., Stehouwer, Coen D.A., van der Kallen, Carla J.H., Schalkwijk, Casper G., Wijmenga, Cisca, Zhernakova, Sasha, Tigchelaar, Ettje F., Slagboom, P. Eline, Beekman, Marian, Deelen, Joris, van Heemst, Diana, Veldink, Jan H., van den Berg, Leonard H., van Duijn, Cornelia M., Hofman, Bert A., Uitterlinden, André G., Jhamai, P. Mila, Verbiest, Michael, Suchiman, H. Eka D., Verkerk, Marijn, van der Breggen, Ruud, van Rooij, Jeroen, Lakenberg, Nico, Mei, Hailiang, van Iterson, Maarten, van Galen, Michiel, Bot, Jan, van ’t Hof, Peter, Deelen, Patrick, Nooren, Irene, Moed, Matthijs, Vermaat, Martijn, Zhernakova, Dasha V., Luijk, René, Bonder, Marc Jan, van Dijk, Freerk, Arindrarto, Wibowo, Kielbasa, Szymon M., Swertz, Morris A., van Zwet, Erik W., Levy, Daniel, Martin, Nicholas G., Starr, John M., Wijmenga, Cisca, Wray, Naomi R., Yang, Jian, Montgomery, Grant W., Franke, Lude, Deary, Ian J., Visscher, Peter M.
Published in American journal of human genetics (02.07.2015)
Published in American journal of human genetics (02.07.2015)
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Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes
Ligthart, Symen, Steenaard, Rebecca V., Peters, Marjolein J., van Meurs, Joyce B. J., Sijbrands, Eric J. G., Uitterlinden, André G., Bonder, Marc J., Hofman, Albert, Franco, Oscar H., Dehghan, Abbas
Published in Diabetologia (01.05.2016)
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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage
Brandt, Bernd W, Bonder, Marc J, Huse, Susan M, Zaura, Egija
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk
Kurilshikov, Alexander, van den Munckhof, Inge C L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan
Published in Circulation research (07.06.2019)
Published in Circulation research (07.06.2019)
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Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration
Deelen, Patrick, Bonder, Marc Jan, van der Velde, K Joeri, Westra, Harm-Jan, Winder, Erwin, Hendriksen, Dennis, Franke, Lude, Swertz, Morris A
Published in BMC research notes (11.12.2014)
Published in BMC research notes (11.12.2014)
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Genetic and epigenetic regulation of gene expression in fetal and adult human livers
Bonder, Marc Jan, Kasela, Silva, Kals, Mart, Tamm, Riin, Lokk, Kaie, Barragan, Isabel, Buurman, Wim A, Deelen, Patrick, Greve, Jan-Willem, Ivanov, Maxim, Rensen, Sander S, van Vliet-Ostaptchouk, Jana V, Wolfs, Marcel G, Fu, Jingyuan, Hofker, Marten H, Wijmenga, Cisca, Zhernakova, Alexandra, Ingelman-Sundberg, Magnus, Franke, Lude, Milani, Lili
Published in BMC genomics (04.10.2014)
Published in BMC genomics (04.10.2014)
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Genome-wide identification of directed gene networks using large-scale population genomics data
Luijk, René, Dekkers, Koen F., van Iterson, Maarten, Arindrarto, Wibowo, Claringbould, Annique, Hop, Paul, Boomsma, Dorret I., van Duijn, Cornelia M., van Greevenbroek, Marleen M. J., Veldink, Jan H., Wijmenga, Cisca, Franke, Lude, ’t Hoen, Peter A. C., Jansen, Rick, van Meurs, Joyce, Mei, Hailiang, Slagboom, P. Eline, Heijmans, Bastiaan T., van Zwet, Erik W.
Published in Nature communications (06.08.2018)
Published in Nature communications (06.08.2018)
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Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes
Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E., Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R., Sidorenko, Julia, Wu, Yeda, McRae, Allan F., Visscher, Peter M., Zeng, Jian, Yang, Jian
Published in Nature communications (27.07.2018)
Published in Nature communications (27.07.2018)
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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA 1c levels: a systematic review and replication in a case-control sample of the Lifelines study
Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M W, Bonder, Marc J, Lutgers, Helen L, Snieder, Harold, Wolffenbuttel, Bruce H R, van Vliet-Ostaptchouk, Jana V
Published in Diabetologia (01.02.2018)
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Published in Diabetologia (01.02.2018)
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Microbial Impact on Plasma Metabolites is Linked to the Cardiovascular Risk and Phenotypes
van den Munckhof, Inge C., Kurilshikov, Alexander, Bonder, Marc J., Schraa, Kiki, Rutten, Joost H., Riksen, Niels P., de Graaf, Jacqueline, Oosting, Marije, Joosten, Leo A., Koonen, Debby, Slagboom, Eline P., Xavier, Ramnik J., Kuipers, Folkert, Hofker, Marten H., Wijmenga, Cisca, Netea, Mihai G., Zhernakova, Alexandra, Fu, Jingyuan
Published in Atherosclerosis. Supplements (01.06.2018)
Published in Atherosclerosis. Supplements (01.06.2018)
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Discovery and Quality Analysis of a Comprehensive Set of Structural Variants and Short Tandem Repeats
Jakubosky, David, Smith, Erin N, D'antonio, Matteo, Bonder, Marc J, Young Greenwald, William W, Matsui, Hiroko, D'antonio-Chronowska, Agnieszka, I2qtl Consortium, Consortium, Hipsci, Stegle, Oliver, Montgomery, Stephen B, Deboever, Christopher, Frazer, Kelly A
Published in bioRxiv (25.07.2019)
Published in bioRxiv (25.07.2019)
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