Accelerating genomic workflows using NVIDIA Parabricks
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Published in BMC bioinformatics (31.05.2023)
Published in BMC bioinformatics (31.05.2023)
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FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources
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Published in Cell systems (27.11.2019)
Published in Cell systems (27.11.2019)
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The NIH Human Microbiome Project
Peterson, Jane, Garges, Susan, Giovanni, Maria, McInnes, Pamela, Wang, Lu, Schloss, Jeffery A, Bonazzi, Vivien, McEwen, Jean E, Wetterstrand, Kris A, Deal, Carolyn, Baker, Carl C, Di Francesco, Valentina, Howcroft, T Kevin, Karp, Robert W, Lunsford, R Dwayne, Wellington, Christopher R, Belachew, Tsegahiwot, Wright, Michael, Giblin, Christina, David, Hagit, Mills, Melody, Salomon, Rachelle, Mullins, Christopher, Akolkar, Beena, Begg, Lisa, Davis, Cindy, Grandison, Lindsey, Humble, Michael, Khalsa, Jag, Little, A Roger, Peavy, Hannah, Pontzer, Carol, Portnoy, Matthew, Sayre, Michael H, Starke-Reed, Pamela, Zakhari, Samir, Read, Jennifer, Watson, Bracie, Guyer, Mark
Published in Genome research (01.12.2009)
Published in Genome research (01.12.2009)
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
Glöckner, Frank Oliver, Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R, Amaral-Zettler, Linda, Gilbert, Jack A, Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Philippe, Sterk, Peter, Arumugam, Manimozhiyan, Bailey, Mark, Baumgartner, Laura, Birren, Bruce W, Blaser, Martin J, Bonazzi, Vivien, Booth, Tim, Bork, Peer, Bushman, Frederic D, Buttigieg, Pier Luigi, Chain, Patrick S G, Charlson, Emily, Costello, Elizabeth K, Huot-Creasy, Heather, Dawyndt, Peter, DeSantis, Todd, Fierer, Noah, Fuhrman, Jed A, Gallery, Rachel E, Gevers, Dirk, Gibbs, Richard A, Gil, Inigo San, Gonzalez, Antonio, Gordon, Jeffrey I, Guralnick, Robert, Hankeln, Wolfgang, Highlander, Sarah, Hugenholtz, Philip, Jansson, Janet, Kau, Andrew L, Kelley, Scott T, Kennedy, Jerry, Knights, Dan, Koren, Omry, Kuczynski, Justin, Kyrpides, Nikos, Larsen, Robert, Lauber, Christian L, Legg, Teresa, Ley, Ruth E, Lozupone, Catherine A, Ludwig, Wolfgang, Lyons, Donna, Maguire, Eamonn, Methé, Barbara A, Meyer, Folker, Muegge, Brian, Nakielny, Sara, Nelson, Karen E, Nemergut, Diana, Neufeld, Josh D, Newbold, Lindsay K, Oliver, Anna E, Pace, Norman R, Palanisamy, Giriprakash, Peplies, Jörg, Petrosino, Joseph, Proctor, Lita, Pruesse, Elmar, Quast, Christian, Raes, Jeroen, Ratnasingham, Sujeevan, Ravel, Jacques, Relman, David A, Assunta-Sansone, Susanna, Schloss, Patrick D, Schriml, Lynn, Sinha, Rohini, Smith, Michelle I, Sodergren, Erica, Spor, Aymé, Stombaugh, Jesse, Tiedje, James M, Ward, Doyle V, Weinstock, George M, Wendel, Doug, White, Owen, Whiteley, Andrew, Wilke, Andreas, Wortman, Jennifer R, Yatsunenko, Tanya
Published in Nature biotechnology (01.05.2011)
Published in Nature biotechnology (01.05.2011)
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Playing catch-up in building an open research commons
Bourne, Philip E., Bonazzi, Vivien, Brand, Amy, Carroll, Bonnie, Foster, Ian, Guha, Ramanathan V., Hanisch, Robert, Keller, Sallie Ann, Kennedy, Mary Lee, Kirkpatrick, Christine, Mons, Barend, Nusser, Sarah M., Stebbins, Michael, Strawn, George, Szalay, Alex
Published in Science (American Association for the Advancement of Science) (15.07.2022)
Published in Science (American Association for the Advancement of Science) (15.07.2022)
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The Celera Discovery System
Kerlavage, Anthony, Bonazzi, Vivien, di Tommaso, Matteo, Lawrence, Charles, Li, Peter, Mayberry, Frank, Mural, Richard, Nodell, Marc, Yandell, Mark, Zhang, Jinghui, Thomas, Paul
Published in Nucleic acids research (01.01.2002)
Published in Nucleic acids research (01.01.2002)
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Playing catch-up in building an open research commons
Bourne, Philip E, Bonazzi, Vivien, Brand, Amy, Carroll, Bonnie, Foster, Ian, Guha, Ramanathan V, Hanisch, Robert, Keller, Sallie Ann, Mary Lee Kennedy, Kirkpatrick, Christine, Mons, Barend, Nusser, Sarah M, Stebbins, Michael, Strawn, George, Szalay, Alex
Published in arXiv.org (15.07.2022)
Published in arXiv.org (15.07.2022)
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Workflows Community Summit: Bringing the Scientific Workflows Community Together
Rafael Ferreira da Silva, Casanova, Henri, Chard, Kyle, Laney, Dan, Ahn, Dong, Jha, Shantenu, Goble, Carole, Ramakrishnan, Lavanya, Peterson, Luc, Enders, Bjoern, Thain, Douglas, Altintas, Ilkay, Babuji, Yadu, Badia, Rosa M, Bonazzi, Vivien, Coleman, Taina, Crusoe, Michael, Deelman, Ewa, Frank Di Natale, Paolo Di Tommaso, Fahringer, Thomas, Filgueira, Rosa, Fursin, Grigori, Ganose, Alex, Gruning, Bjorn, Katz, Daniel S, Kuchar, Olga, Kupresanin, Ana, Ludascher, Bertram, Maheshwari, Ketan, Mattoso, Marta, Mehta, Kshitij, Munson, Todd, Ozik, Jonathan, Peterka, Tom, Pottier, Loic, Randles, Tim, Soiland-Reyes, Stian, Tovar, Benjamin, Turilli, Matteo, Uram, Thomas, Vahi, Karan, Wilde, Michael, Wolf, Matthew, Wozniak, Justin
Published in arXiv.org (16.03.2021)
Published in arXiv.org (16.03.2021)
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The “Minimum Information about an ENvironmental Sequence” (MIENS) specification
Glöckner, Frank Oliver, Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James, Amaral-Zettler, Linda, Gilbert, Jack, Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Phillipe, Sterk, Peter, Arumugam, Mani, Baumgartner, Laura, Birren, Bruce, Blaser, Martin, Bonazzi, Vivien, Bork, Peer, Buttigieg, Pier Luigi, Chain, Patrick, Costello, Elizabeth, Huot-Creasy, Heather, Dawyndt, Peter, DeSantis, Todd, Fierer, Noah, Fuhrman, Jed, Gallery, Rachel, Gibbs, Richard, Giglio, Michelle Gwinn, San Gil, Inigo, Glass, Elizabeth, Gonzalez, Antonio, Gordon, Jeffrey, Guralnick, Robert, Hankeln, Wolfgang, Highlander, Sarah, Hugenholtz, Philip, Jansson, Janet, Kennedy, Jerry, Knights, Dan, Koren, Omry, Kuczynski, Justin, Kyrpides, Nikos, Larsen, Robert, Lauber, Christian, Legg, Teresa, Ley, Ruth, Lozupone, Catherine, Ludwig, Wolfgang, Lyons, Donna, Maguire, Eamonn, Methé, Barbara, Meyer, Folker, Nakielny, Sara, Nelson, Karen, Nemergut, Diana, Neufeld, Josh, Pace, Norman, Palanisamy, Giriprakash, Peplies, Jörg, Peterson, Jane, Petrosino, Joseph, Proctor, Lita, Raes, Jeroen, Ratnasingham, Sujeevan, Ravel, Jacques, Relman, David, Assunta-Sansone, Susanna, Schriml, Lynn, Sodergren, Erica, Spor, Aymé, Stombaugh, Jesse, Tiedje, James, Ward, Doyle, Weinstock, George, Wendel, Doug, White, Owen, Wilke, Andreas, Wortmann, Jennifer
Published in Nature precedings (16.11.2010)
Published in Nature precedings (16.11.2010)
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FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources
Clark, Daniel J B, Wang, Lily, Jones, Alex, Wojciechowicz, Megan L, Torre, Denis, Jagodnik, Kathleen M, Jenkins, Sherry L, Mcquilton, Peter, Flamholz, Zachary, Silverstein, Moshe C, Schilder, Brian M, Robasky, Kimberly, Castillo, Claris, Idaszak, Ray, Ahalt, Stanley C, Williams, Jason J, Schurer, Stephan, Cooper, Daniel J, De Miranda Azevedo, Ricardo, Klenk, Juergen A, Haendel, Melissa A, Nedzel, Jared, Avillach, Paul, Shimoyama, Mary, Harris, Rayna M, Gamble, Meredith, Poten, Rudy, Charbonneau, Amanda L, Larkin, Jennie, C Titus Brown, Bonazzi, Vivien R, Dumontier, Michel J, Assunta-Sansone, Susanna, Ma'ayan, Avi
Published in bioRxiv (03.06.2019)
Published in bioRxiv (03.06.2019)
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FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies
Sansone, Susanna-Assunta, Mcquilton, Peter, Rocca-Serra, Philippe, Gonzalez-Beltran, Alejandra, Izzo, Massimiliano, Lister, Allyson, Thurston, Milo, Batista, Dominique, Granell, Ramon, Adekale, Melanie, Dauga, Delphine, Ganley, Emma, Hodson, Simon, Lawrence, Rebecca, Khodiyar, Varsha, Tenenbaum, Jessica, J Myles Axton, Ball, Michael, Besson, Sebastien, Bloom, Theodora, Bonazzi, Vivien, Jimenez, Rafael, Carr, David, Chan, Wei Mun, Chung, Caty, Clement-Stoneham, Geraldine, Cousijn, Helena, Dayalan, Saravanan, Dumontier, Michel, Yeumo, Esther Dzale, Edmunds, Scott, Everitt, Nicholas, Fripp, Dom, Goble, Carole, Golebiewski, Martin, Hall, Neil, Hanisch, Robert, Hucka, Michael, Huerta, Michael, Kenall, Amye, Kiley, Robert, Klenk, Juergen, Koureas, Dimitrios, Larkin, Jennie, Lemberger, Thomas, Lynch, Nick, Schriml, Lynn, Ma'ayan, Avi, Maccallum, Catriona, Mons, Barend, Moore, Josh, Muller, Wolfgang, Murray, Hollydawn, Nobusada, Tomoe, Noesgaard, Daniel, Paxton-Boyd, Jennifer, Orchard, Sandra, Rustici, Gabriella, Schurer, Stephan, Sharples, Kathryn, Silva, Marina Soares E, Stanford, Natalie J, Subirats-Coll, Inmaculada, Swedlow, Jason, Weida Tong, Wilkinson, Mark, Wise, John, Yilmaz, Pelin
Published in bioRxiv (26.09.2018)
Published in bioRxiv (26.09.2018)
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A preliminary comparison of the mouse and human genomes
Mural, Richard J, Myers, Eugene W, Smith, Hamilton, Gabor Miklos, George L, Wides, Ron, Halpern, Aaron, Li, Peter W, Sutton, Granger, Nadeau, Joseph H, Salzberg, Steven L, Holt, Robert, Evans, Cheryl A, Lu, Fu, Biddick, Kendra, Bonazzi, Vivien, Delcher, Arthur, Zheng, Xiangqun H, Yandell, Mark, Rusch, Doug, Majoros, William, Hoover, Jeff, Wang, Jian, Venter, J.Craig, Adams, Mark D
Published in International Congress series (01.12.2002)
Published in International Congress series (01.12.2002)
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