Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
Sadegh, Sepideh, Matschinske, Julian, Blumenthal, David B., Galindez, Gihanna, Kacprowski, Tim, List, Markus, Nasirigerdeh, Reza, Oubounyt, Mhaned, Pichlmair, Andreas, Rose, Tim Daniel, Salgado-Albarrán, Marisol, Späth, Julian, Stukalov, Alexey, Wenke, Nina K., Yuan, Kevin, Pauling, Josch K., Baumbach, Jan
Published in Nature communications (14.07.2020)
Published in Nature communications (14.07.2020)
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Network medicine for disease module identification and drug repurposing with the NeDRex platform
Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Bernett, Judith, Blumenthal, David B., Galindez, Gihanna, Salgado-Albarrán, Marisol, Lazareva, Olga, Flanagan, Keith, Cockell, Simon, Nogales, Cristian, Casas, Ana I., Schmidt, Harald H. H. W., Baumbach, Jan, Wipat, Anil, Kacprowski, Tim
Published in Nature communications (25.11.2021)
Published in Nature communications (25.11.2021)
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Journal Article
Increased Skeletal Muscle Capillarization Independently Enhances Insulin Sensitivity in Older Adults After Exercise Training and Detraining
Prior, Steven J, Goldberg, Andrew P, Ortmeyer, Heidi K, Chin, Eva R, Chen, Dapeng, Blumenthal, Jacob B, Ryan, Alice S
Published in Diabetes (New York, N.Y.) (01.10.2015)
Published in Diabetes (New York, N.Y.) (01.10.2015)
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The AIMe registry for artificial intelligence in biomedical research
Matschinske, Julian, Alcaraz, Nicolas, Benis, Arriel, Golebiewski, Martin, Grimm, Dominik G., Heumos, Lukas, Kacprowski, Tim, Lazareva, Olga, List, Markus, Louadi, Zakaria, Pauling, Josch K., Pfeifer, Nico, Röttger, Richard, Schwämmle, Veit, Sturm, Gregor, Traverso, Alberto, Van Steen, Kristel, de Freitas, Martiela Vaz, Villalba Silva, Gerda Cristal, Wee, Leonard, Wenke, Nina K., Zanin, Massimiliano, Zolotareva, Olga, Baumbach, Jan, Blumenthal, David B.
Published in Nature methods (01.10.2021)
Published in Nature methods (01.10.2021)
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Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond
Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Maier, Andreas, Adamowicz, Klaudia, Möller, Anna, Kriege, Nils M., Kronberg, Jaanika, Haller, Toomas, Kacprowski, Tim, Wipat, Anil, Baumbach, Jan, Blumenthal, David B.
Published in Nature communications (25.03.2023)
Published in Nature communications (25.03.2023)
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Journal Article
Flimma: a federated and privacy-aware tool for differential gene expression analysis
Zolotareva, Olga, Nasirigerdeh, Reza, Matschinske, Julian, Torkzadehmahani, Reihaneh, Bakhtiari, Mohammad, Frisch, Tobias, Späth, Julian, Blumenthal, David B, Abbasinejad, Amir, Tieri, Paolo, Kaissis, Georgios, Rückert, Daniel, Wenke, Nina K, List, Markus, Baumbach, Jan
Published in Genome Biology (14.12.2021)
Published in Genome Biology (14.12.2021)
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Journal Article
Aerobic Exercise and Weight Loss Reduce Vascular Markers of Inflammation and Improve Insulin Sensitivity in Obese Women
Ryan, Alice S., Ge, Shealinna, Blumenthal, Jacob B., Serra, Monica C., Prior, Steven J., Goldberg, Andrew P.
Published in Journal of the American Geriatrics Society (JAGS) (01.04.2014)
Published in Journal of the American Geriatrics Society (JAGS) (01.04.2014)
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Network medicine-based epistasis detection in complex diseases: ready for quantum computing
Hoffmann, Markus, Poschenrieder, Julian M, Incudini, Massimiliano, Baier, Sylvie, Fritz, Amelie, Maier, Andreas, Hartung, Michael, Hoffmann, Christian, Trummer, Nico, Adamowicz, Klaudia, Picciani, Mario, Scheibling, Evelyn, Harl, Maximilian V, Lesch, Ingmar, Frey, Hunor, Kayser, Simon, Wissenberg, Paul, Schwartz, Leon, Hafner, Leon, Acharya, Aakriti, Hackl, Lena, Grabert, Gordon, Lee, Sung-Gwon, Cho, Gyuhyeok, Cloward, Matthew E, Jankowski, Jakub, Lee, Hye Kyung, Tsoy, Olga, Wenke, Nina, Pedersen, Anders Gorm, Bønnelykke, Klaus, Mandarino, Antonio, Melograna, Federico, Schulz, Laura, Climente-González, Héctor, Wilhelm, Mathias, Iapichino, Luigi, Wienbrandt, Lars, Ellinghaus, David, Van Steen, Kristel, Grossi, Michele, Furth, Priscilla A, Hennighausen, Lothar, Di Pierro, Alessandra, Baumbach, Jan, Kacprowski, Tim, List, Markus, Blumenthal, David B
Published in Nucleic acids research (23.09.2024)
Published in Nucleic acids research (23.09.2024)
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Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing
Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D, Baier, Sylvie, Blumenthal, David B, Chen, Jing, Elkjaer, Maria L, Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Malod-Dognin, Noel, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pastrello, Chiara, Pico, Alexander R, Pillich, Rudolf T, Poschenrieder, Julian M, Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Rui-Sheng, Zolotareva, Olga, Baumbach, Jan
Published in Nucleic acids research (23.05.2024)
Published in Nucleic acids research (23.05.2024)
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Journal Article
The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D
Wang, Dan-Dan, Katoch, Mitali, Jabari, Samir, Blumcke, Ingmar, Blumenthal, David B, Lu, De-Hong, Coras, Roland, Wang, Yu-Jiao, Shi, Jie, Zhou, Wen-Jing, Kobow, Katja, Piao, Yue-Shan
Published in Acta neuropathologica communications (09.08.2023)
Published in Acta neuropathologica communications (09.08.2023)
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Journal Article
Correction to: The specific DNA methylation landscape in focal cortical dysplasia ILAE type 3D
Wang, Dan-Dan, Katoch, Mitali, Jabari, Samir, Blumcke, Ingmar, Blumenthal, David B, Lu, De-Hong, Coras, Roland, Wang, Yu-Jiao, Shi, Jie, Zhou, Wen-Jing, Kobow, Katja, Piao, Yue-Shan
Published in Acta neuropathologica communications (29.03.2024)
Published in Acta neuropathologica communications (29.03.2024)
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Journal Article
Pathways in Skeletal Muscle: Protein Signaling and Insulin Sensitivity after Exercise Training and Weight Loss Interventions in Middle-Aged and Older Adults
Ryan, Alice S, Li, Guoyan, McMillin, Shawna, Prior, Steven J, Blumenthal, Jacob B, Mastella, Laura
Published in Cells (Basel, Switzerland) (10.12.2021)
Published in Cells (Basel, Switzerland) (10.12.2021)
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Journal Article
Type 2 diabetes and older age contribute to elevated plasma microparticle concentrations independent of chronic stroke
Landers‐Ramos, Rian Q., Serra, Monica C., Blumenthal, Jacob B., Ryan, Alice S., Hafer‐Macko, Charlene E., Prior, Steven J.
Published in Experimental physiology (01.11.2018)
Published in Experimental physiology (01.11.2018)
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Circulating microparticle concentrations across acute and chronic cardiovascular disease conditions
Landers‐Ramos, Rian Q., Addison, Odessa A., Beamer, Brock, Katzel, Leslie I., Blumenthal, Jacob B., Robinson, Shawn, Hagberg, James M., Prior, Steven J.
Published in Physiological reports (01.08.2020)
Published in Physiological reports (01.08.2020)
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Weight loss and low-intensity exercise for the treatment of metabolic syndrome in obese postmenopausal women
Joseph, Lyndon J, Prigeon, Ronald L, Blumenthal, Jacob B, Ryan, Alice S, Goldberg, Andrew P
Published in The journals of gerontology. Series A, Biological sciences and medical sciences (01.09.2011)
Published in The journals of gerontology. Series A, Biological sciences and medical sciences (01.09.2011)
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Cracking the black box of deep sequence-based protein–protein interaction prediction
Bernett, Judith, Blumenthal, David B, List, Markus
Published in Briefings in bioinformatics (22.01.2024)
Published in Briefings in bioinformatics (22.01.2024)
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Journal Article
Elevated Plasma Aβ42 in Cognitively Impaired Individuals Taking ACE Inhibitor Antihypertensives
Regenold, William T., Blumenthal, Jacob B., Loreck, David J., Mordecai, Kristen L., Scarinzi, Gina, Doddi, Seshagiri R., Adler, Lawrence
Published in American journal of Alzheimer's disease and other dementias (01.09.2017)
Published in American journal of Alzheimer's disease and other dementias (01.09.2017)
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