Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona
Blume, John E., Manning, William C., Troiano, Gregory, Hornburg, Daniel, Figa, Michael, Hesterberg, Lyndal, Platt, Theodore L., Zhao, Xiaoyan, Cuaresma, Rea A., Everley, Patrick A., Ko, Marwin, Liou, Hope, Mahoney, Max, Ferdosi, Shadi, Elgierari, Eltaher M., Stolarczyk, Craig, Tangeysh, Behzad, Xia, Hongwei, Benz, Ryan, Siddiqui, Asim, Carr, Steven A., Ma, Philip, Langer, Robert, Farias, Vivek, Farokhzad, Omid C.
Published in Nature communications (22.07.2020)
Published in Nature communications (22.07.2020)
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Journal Article
Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls
Donovan, Margaret K R, Huang, Yingxiang, Blume, John E, Wang, Jian, Hornburg, Daniel, Ferdosi, Shadi, Mohtashemi, Iman, Kim, Sangtae, Ko, Marwin, Benz, Ryan W, Platt, Theodore L, Batzoglou, Serafim, Diaz, Luis A, Farokhzad, Omid C, Siddiqui, Asim
Published in PloS one (29.03.2023)
Published in PloS one (29.03.2023)
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Journal Article
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Darnell, Robert B, Licatalosi, Donny D, Mele, Aldo, Fak, John J, Ule, Jernej, Kayikci, Melis, Chi, Sung Wook, Clark, Tyson A, Schweitzer, Anthony C, Blume, John E, Wang, Xuning, Darnell, Jennifer C
Published in Nature (27.11.2008)
Published in Nature (27.11.2008)
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Journal Article
Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions
Ferdosi, Shadi, Tangeysh, Behzad, Brown, Tristan R, Everley, Patrick A, Figa, Michael, McLean, Matthew, Elgierari, Eltaher M, Zhao, Xiaoyan, Garcia, Veder J, Wang, Tianyu, Chang, Matthew E K, Riedesel, Kateryna, Chu, Jessica, Mahoney, Max, Xia, Hongwei, O'Brien, Evan S, Stolarczyk, Craig, Harris, Damian, Platt, Theodore L, Ma, Philip, Goldberg, Martin, Langer, Robert, Flory, Mark R, Benz, Ryan, Tao, Wei, Cuevas, Juan Cruz, Batzoglou, Serafim, Blume, John E, Siddiqui, Asim, Hornburg, Daniel, Farokhzad, Omid C
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2022)
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Journal Article
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
Ni, Julie Z, Grate, Leslie, Donohue, John Paul, Preston, Christine, Nobida, Naomi, O'Brien, Georgeann, Shiue, Lily, Clark, Tyson A, Blume, John E, Ares, Jr, Manuel
Published in Genes & development (15.03.2007)
Published in Genes & development (15.03.2007)
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Journal Article
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
Salomonis, Nathan, Schlieve, Christopher R, Pereira, Laura, Wahlquist, Christine, Colas, Alexandre, Zambon, Alexander C, Vranizan, Karen, Spindler, Matthew J, Pico, Alexander R, Cline, Melissa S, Clark, Tyson A, Williams, Alan, Blume, John E, Samal, Eva, Mercola, Mark, Merrill, Bradley J, Conklin, Bruce R
Published in Proceedings of the National Academy of Sciences - PNAS (08.06.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (08.06.2010)
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Journal Article
Identification of Genetic Variants Contributing to Cisplatin-Induced Cytotoxicity by Use of a Genomewide Approach
Huang, R. Stephanie, Duan, Shiwei, Shukla, Sunita J., Kistner, Emily O., Clark, Tyson A., Chen, Tina X., Schweitzer, Anthony C., Blume, John E., Dolan, M. Eileen
Published in American journal of human genetics (01.09.2007)
Published in American journal of human genetics (01.09.2007)
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Journal Article
Discovery of tissue-specific exons using comprehensive human exon microarrays
Clark, Tyson A, Schweitzer, Anthony C, Chen, Tina X, Staples, Michelle K, Lu, Gang, Wang, Hui, Williams, Alan, Blume, John E
Published in Genome biology (01.01.2007)
Published in Genome biology (01.01.2007)
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Journal Article
Integrated detection and population-genetic analysis of SNPs and copy number variation
McCarroll, Steven A, Altshuler, David, Kuruvilla, Finny G, Korn, Joshua M, Cawley, Simon, Nemesh, James, Wysoker, Alec, Shapero, Michael H, de Bakker, Paul I W, Maller, Julian B, Kirby, Andrew, Elliott, Amanda L, Parkin, Melissa, Hubbell, Earl, Webster, Teresa, Mei, Rui, Veitch, James, Collins, Patrick J, Handsaker, Robert, Lincoln, Steve, Nizzari, Marcia, Blume, John, Jones, Keith W, Rava, Rich, Daly, Mark J, Gabriel, Stacey B
Published in Nature genetics (01.10.2008)
Published in Nature genetics (01.10.2008)
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Journal Article
A large-scale and robust dynamic MRM study of colorectal cancer biomarkers
You, Jia, Kao, Athit, Dillon, Roslyn, Croner, Lisa J., Benz, Ryan, Blume, John E., Wilcox, Bruce
Published in Journal of proteomics (15.09.2018)
Published in Journal of proteomics (15.09.2018)
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Journal Article
Unusual intron conservation near tissue-regulated exons found by splicing microarrays
Sugnet, Charles W, Srinivasan, Karpagam, Clark, Tyson A, O'Brien, Georgeann, Cline, Melissa S, Wang, Hui, Williams, Alan, Kulp, David, Blume, John E, Haussler, David, Ares, Jr, Manuel
Published in PLoS computational biology (01.01.2006)
Published in PLoS computational biology (01.01.2006)
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Journal Article
A Genome-Wide Approach to Identify Genetic Variants That Contribute to Etoposide-Induced Cytotoxicity
Huang, R. Stephanie, Duan, Shiwei, Bleibel, Wasim K., Kistner, Emily O., Zhang, Wei, Clark, Tyson A., Chen, Tina X., Schweitzer, Anthony C., Blume, John E., Cox, Nancy J., Dolan, M. Eileen
Published in Proceedings of the National Academy of Sciences - PNAS (05.06.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (05.06.2007)
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Journal Article
Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations
Zhang, Wei, Duan, Shiwei, Kistner, Emily O., Bleibel, Wasim K., Huang, R. Stephanie, Clark, Tyson A., Chen, Tina X., Schweitzer, Anthony C., Blume, John E., Cox, Nancy J., Dolan, M. Eileen
Published in American journal of human genetics (01.03.2008)
Published in American journal of human genetics (01.03.2008)
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Journal Article
Genetic Architecture of Transcript-Level Variation in Humans
Duan, Shiwei, Huang, R. Stephanie, Zhang, Wei, Bleibel, Wasim K., Roe, Cheryl A., Clark, Tyson A., Chen, Tina X., Schweitzer, Anthony C., Blume, John E., Cox, Nancy J., Dolan, M. Eileen
Published in American journal of human genetics (01.05.2008)
Published in American journal of human genetics (01.05.2008)
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Journal Article
862 The Discovery and Validation of Blood Plasma Protein-Based Classifier Panels for Colorectal Cancer and Advanced Adenoma Using a Combined Mass Spectrometry- and ELISA-Based Workflow in Studies Including 1,605 Patient Samples
Wilcox, Bruce E, Benz, Ryan W, Croner, Lisa J, Dillon, Roslyn, Jones, Jeffrey J, Kao, Athit, You, Jia, Blume, John E
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2016)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2016)
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Journal Article
Heritability of alternative splicing in the human genome
Kwan, Tony, Benovoy, David, Dias, Christel, Gurd, Scott, Serre, David, Zuzan, Harry, Clark, Tyson A, Schweitzer, Anthony, Staples, Michelle K, Wang, Hui, Blume, John E, Hudson, Thomas J, Sladek, Rob, Majewski, Jacek
Published in Genome Research (01.08.2007)
Published in Genome Research (01.08.2007)
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Journal Article
correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
Das, Debopriya, Clark, Tyson A, Schweitzer, Anthony, Yamamoto, Miki, Marr, Henry, Arribere, Josh, Minovitsky, Simon, Poliakov, Alexander, Dubchak, Inna, Blume, John E, Conboy, John G
Published in Nucleic acids research (01.07.2007)
Published in Nucleic acids research (01.07.2007)
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Journal Article