Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19
D'Agnillo, Felice, Walters, Kathie-Anne, Xiao, Yongli, Sheng, Zong-Mei, Scherler, Kelsey, Park, Jaekeun, Gygli, Sebastian, Rosas, Luz Angela, Sadtler, Kaitlyn, Kalish, Heather, Blatti, 3rd, Charles A, Zhu, Ruoqing, Gatzke, Lisa, Bushell, Colleen, Memoli, Matthew J, O'Day, Steven J, Fischer, Trevan D, Hammond, Terese C, Lee, Raymond C, Cash, J Christian, Powers, Matthew E, O'Keefe, Grant E, Butnor, Kelly J, Rapkiewicz, Amy V, Travis, William D, Layne, Scott P, Kash, John C, Taubenberger, Jeffery K
Published in Science translational medicine (17.11.2021)
Published in Science translational medicine (17.11.2021)
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Journal Article
The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression
Ament, Seth A, Wang, Ying, Chen, Chieh-Chun, Blatti, Charles A, Hong, Feng, Liang, Zhengzheng S, Negre, Nicolas, White, Kevin P, Rodriguez-Zas, Sandra L, Mizzen, Craig A, Sinha, Saurabh, Zhong, Sheng, Robinson, Gene E
Published in PLoS genetics (01.03.2012)
Published in PLoS genetics (01.03.2012)
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Journal Article
Core and region-enriched networks of behaviorally regulated genes and the singing genome
Whitney, Osceola, Pfenning, Andreas R., Howard, Jason T., Blatti, Charles A., Liu, Fang, Ward, James M., Wang, Rui, Audet, Jean-Nicolas, Kellis, Manolis, Mukherjee, Sayan, Sinha, Saurabh, Hartemink, Alexander J., West, Anne E., Jarvis, Erich D.
Published in Science (American Association for the Advancement of Science) (12.12.2014)
Published in Science (American Association for the Advancement of Science) (12.12.2014)
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Journal Article
Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform
Blatti, 3rd, Charles, Emad, Amin, Berry, Matthew J, Gatzke, Lisa, Epstein, Milt, Lanier, Daniel, Rizal, Pramod, Ge, Jing, Liao, Xiaoxia, Sobh, Omar, Lambert, Mike, Post, Corey S, Xiao, Jinfeng, Groves, Peter, Epstein, Aidan T, Chen, Xi, Srinivasan, Subhashini, Lehnert, Erik, Kalari, Krishna R, Wang, Liewei, Weinshilboum, Richard M, Song, Jun S, Jongeneel, C Victor, Han, Jiawei, Ravaioli, Umberto, Sobh, Nahil, Bushell, Colleen B, Sinha, Saurabh
Published in PLoS biology (01.01.2020)
Published in PLoS biology (01.01.2020)
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Journal Article
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
He, Xin, Samee, Md Abul Hassan, Blatti, Charles, Sinha, Saurabh
Published in PLoS computational biology (16.09.2010)
Published in PLoS computational biology (16.09.2010)
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Journal Article
Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks
Jones, Beryl M, Rao, Vikyath D, Gernat, Tim, Jagla, Tobias, Cash-Ahmed, Amy C, Rubin, Benjamin Er, Comi, Troy J, Bhogale, Shounak, Husain, Syed S, Blatti, Charles, Middendorf, Martin, Sinha, Saurabh, Chandrasekaran, Sriram, Robinson, Gene E
Published in eLife (22.12.2020)
Published in eLife (22.12.2020)
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Journal Article
Uncovering Effective Explanations for Interactive Genomic Data Analysis
Huang, Silu, Blatti, Charles, Sinha, Saurabh, Parameswaran, Aditya
Published in Patterns (New York, N.Y.) (11.09.2020)
Published in Patterns (New York, N.Y.) (11.09.2020)
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Journal Article
New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior
Ament, Seth A, Blatti, Charles A, Alaux, Cedric, Wheeler, Marsha M, Toth, Amy L, Le Conte, Yves, Hunt, Greg J, Guzmán-Novoa, Ernesto, Degrandi-Hoffman, Gloria, Uribe-Rubio, Jose Luis, Amdam, Gro V, Page, Jr, Robert E, Rodriguez-Zas, Sandra L, Robinson, Gene E, Sinha, Saurabh
Published in Proceedings of the National Academy of Sciences - PNAS (26.06.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (26.06.2012)
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Journal Article
Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi )
Kapheim, Karen M, Pan, Hailin, Li, Cai, Blatti, 3rd, Charles, Harpur, Brock A, Ioannidis, Panagiotis, Jones, Beryl M, Kent, Clement F, Ruzzante, Livio, Sloofman, Laura, Stolle, Eckart, Waterhouse, Robert M, Zayed, Amro, Zhang, Guojie, Wcislo, William T
Published in G3 : genes - genomes - genetics (01.03.2019)
Published in G3 : genes - genomes - genetics (01.03.2019)
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Journal Article
Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials
Kazemian, Majid, Blatti, Charles, Richards, Adam, McCutchan, Michael, Wakabayashi-Ito, Noriko, Hammonds, Ann S, Celniker, Susan E, Kumar, Sudhir, Wolfe, Scot A, Brodsky, Michael H, Sinha, Saurabh
Published in PLoS biology (01.08.2010)
Published in PLoS biology (01.08.2010)
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Journal Article
Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism
Blatti, Charles, Kazemian, Majid, Wolfe, Scot, Brodsky, Michael, Sinha, Saurabh
Published in Nucleic acids research (30.04.2015)
Published in Nucleic acids research (30.04.2015)
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Journal Article
Genomic signatures of evolutionary transitions from solitary to group living
Kapheim, Karen M., Pan, Hailin, Li, Cai, Salzberg, Steven L., Puiu, Daniela, Magoc, Tanja, Robertson, Hugh M., Hudson, Matthew E., Venkat, Aarti, Fischman, Brielle J., Hernandez, Alvaro, Yandell, Mark, Ence, Daniel, Holt, Carson, Yocum, George D., Kemp, William P., Bosch, Jordi, Waterhouse, Robert M., Zdobnov, Evgeny M., Stolle, Eckart, Kraus, F. Bernhard, Helbing, Sophie, Moritz, Robin F. A., Glastad, Karl M., Hunt, Brendan G., Goodisman, Michael A. D., Hauser, Frank, Grimmelikhuijzen, Cornelis J. P., Pinheiro, Daniel Guariz, Nunes, Francis Morais Franco, Soares, Michelle Prioli Miranda, Tanaka, Érica Donato, Simões, Zilá Luz Paulino, Hartfelder, Klaus, Evans, Jay D., Barribeau, Seth M., Johnson, Reed M., Massey, Jonathan H., Southey, Bruce R., Hasselmann, Martin, Hamacher, Daniel, Biewer, Matthias, Kent, Clement F., Zayed, Amro, Blatti, Charles, Sinha, Saurabh, Johnston, J. Spencer, Hanrahan, Shawn J., Kocher, Sarah D., Wang, Jun, Robinson, Gene E., Zhang, Guojie
Published in Science (American Association for the Advancement of Science) (05.06.2015)
Published in Science (American Association for the Advancement of Science) (05.06.2015)
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Journal Article
Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer
Blatti, Charles, de la Fuente, Jesús, Gao, Huanyao, Marín-Goñi, Irene, Chen, Zikun, Zhao, Sihai D, Tan, Winston, Weinshilboum, Richard, Kalari, Krishna R, Wang, Liewei, Hernaez, Mikel
Published in Cancer research (Chicago, Ill.) (14.04.2023)
Published in Cancer research (Chicago, Ill.) (14.04.2023)
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Journal Article
Social evolution. Genomic signatures of evolutionary transitions from solitary to group living
Kapheim, Karen M, Pan, Hailin, Li, Cai, Salzberg, Steven L, Puiu, Daniela, Magoc, Tanja, Robertson, Hugh M, Hudson, Matthew E, Venkat, Aarti, Fischman, Brielle J, Hernandez, Alvaro, Yandell, Mark, Ence, Daniel, Holt, Carson, Yocum, George D, Kemp, William P, Bosch, Jordi, Waterhouse, Robert M, Zdobnov, Evgeny M, Stolle, Eckart, Kraus, F Bernhard, Helbing, Sophie, Moritz, Robin F A, Glastad, Karl M, Hunt, Brendan G, Goodisman, Michael A D, Hauser, Frank, Grimmelikhuijzen, Cornelis J P, Pinheiro, Daniel Guariz, Nunes, Francis Morais Franco, Soares, Michelle Prioli Miranda, Tanaka, Érica Donato, Simões, Zilá Luz Paulino, Hartfelder, Klaus, Evans, Jay D, Barribeau, Seth M, Johnson, Reed M, Massey, Jonathan H, Southey, Bruce R, Hasselmann, Martin, Hamacher, Daniel, Biewer, Matthias, Kent, Clement F, Zayed, Amro, Blatti, 3rd, Charles, Sinha, Saurabh, Johnston, J Spencer, Hanrahan, Shawn J, Kocher, Sarah D, Wang, Jun, Robinson, Gene E, Zhang, Guojie
Published in Science (American Association for the Advancement of Science) (05.06.2015)
Published in Science (American Association for the Advancement of Science) (05.06.2015)
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Journal Article
Cross‐species systems analysis of evolutionary toolkits of neurogenomic response to social challenge
Saul, Michael C., Blatti, Charles, Yang, Wei, Bukhari, Syed A., Shpigler, Hagai Y., Troy, Joseph M., Seward, Christopher H., Sloofman, Laura, Chandrasekaran, Sriram, Bell, Alison M., Stubbs, Lisa, Robinson, Gene E., Zhao, Sihai D., Sinha, Saurabh
Published in Genes, brain and behavior (01.01.2019)
Published in Genes, brain and behavior (01.01.2019)
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Journal Article