One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock
Ludden, Catherine, Raven, Kathy E, Jamrozy, Dorota, Gouliouris, Theodore, Blane, Beth, Coll, Francesc, de Goffau, Marcus, Naydenova, Plamena, Horner, Carolyne, Hernandez-Garcia, Juan, Wood, Paul, Hadjirin, Nazreen, Radakovic, Milorad, Brown, Nicholas M, Holmes, Mark, Parkhill, Julian, Peacock, Sharon J
Published in mBio (22.01.2019)
Published in mBio (22.01.2019)
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Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis
Coll, Francesc, Raven, Kathy E, Knight, Gwenan M, Blane, Beth, Harrison, Ewan M, Leek, Danielle, Enoch, David A, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in The Lancet. Microbe (01.12.2020)
Published in The Lancet. Microbe (01.12.2020)
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Journal Article
Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community
Coll, Francesc, Harrison, Ewan M, Toleman, Michelle S, Reuter, Sandra, Raven, Kathy E, Blane, Beth, Palmer, Beverley, Kappeler, A Ruth M, Brown, Nicholas M, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Science translational medicine (25.10.2017)
Published in Science translational medicine (25.10.2017)
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Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand
Runcharoen, Chakkaphan, Raven, Kathy E, Reuter, Sandra, Kallonen, Teemu, Paksanont, Suporn, Thammachote, Jeeranan, Anun, Suthatip, Blane, Beth, Parkhill, Julian, Peacock, Sharon J, Chantratita, Narisara
Published in Genome medicine (06.09.2017)
Published in Genome medicine (06.09.2017)
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Journal Article
Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom
Gouliouris, Theodore, Raven, Kathy E, Ludden, Catherine, Blane, Beth, Corander, Jukka, Horner, Carolyne S, Hernandez-Garcia, Juan, Wood, Paul, Hadjirin, Nazreen F, Radakovic, Milorad, Holmes, Mark A, de Goffau, Marcus, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in mBio (06.11.2018)
Published in mBio (06.11.2018)
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Journal Article
The Emergence of Successful Streptococcus pyogenes Lineages through Convergent Pathways of Capsule Loss and Recombination Directing High Toxin Expression
Turner, Claire E, Holden, Matthew T G, Blane, Beth, Horner, Carolyne, Peacock, Sharon J, Sriskandan, Shiranee
Published in mBio (10.12.2019)
Published in mBio (10.12.2019)
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Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England
Harrison, Ewan M, Coll, Francesc, Toleman, Michelle S, Blane, Beth, Brown, Nicholas M, Török, M Estee, Parkhill, Julian, Peacock, Sharon J
Published in Scientific reports (07.08.2017)
Published in Scientific reports (07.08.2017)
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A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing
Raven, Kathy E, Girgis, Sophia T, Akram, Asha, Blane, Beth, Leek, Danielle, Brown, Nicholas, Peacock, Sharon J
Published in Scientific reports (08.01.2021)
Published in Scientific reports (08.01.2021)
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Journal Article
Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study
Ludden, Catherine, Coll, Francesc, Gouliouris, Theodore, Restif, Olivier, Blane, Beth, Blackwell, Grace A, Kumar, Narender, Naydenova, Plamena, Crawley, Charles, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in The Lancet. Microbe (01.09.2021)
Published in The Lancet. Microbe (01.09.2021)
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Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom
Brodrick, Hayley J, Raven, Kathy E, Kallonen, Teemu, Jamrozy, Dorota, Blane, Beth, Brown, Nicholas M, Martin, Veronique, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Genome medicine (25.07.2017)
Published in Genome medicine (25.07.2017)
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Journal Article
Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients
Moradigaravand, Danesh, Gouliouris, Theodore, Blane, Beth, Naydenova, Plamena, Ludden, Catherine, Crawley, Charles, Brown, Nicholas M, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Genome medicine (27.12.2017)
Published in Genome medicine (27.12.2017)
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Journal Article
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Wagner, Josef, Harrison, Ewan M, Martinez Del Pero, Marcos, Blane, Beth, Mayer, Gert, Leierer, Johannes, Gopaluni, Seerapani, Holmes, Mark A, Parkhill, Julian, Peacock, Sharon J, Jayne, David R W, Kronbichler, Andreas
Published in Microbiome (22.10.2019)
Published in Microbiome (22.10.2019)
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Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons
Raven, Kathy E, Bragin, Eugene, Blane, Beth, Leek, Danielle, Kumar, Narender, Rhodes, Paul A, Enoch, David A, Thaxter, Rachel, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in mSphere (21.12.2022)
Published in mSphere (21.12.2022)
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Characteristics of Staphylococcus aureus Isolated from Patients in Busia County Referral Hospital, Kenya
Obanda, Benear Apollo, Cook, Elizabeth A J, Fèvre, Eric M, Bebora, Lilly, Ogara, William, Wang, Shu-Hua, Gebreyes, Wondwossen, Ngetich, Ronald, Wandede, Dolphine, Muyodi, Johnstone, Blane, Beth, Coll, Francesc, Harrison, Ewan M, Peacock, Sharon J, Gitao, George C
Published in Pathogens (Basel) (09.12.2022)
Published in Pathogens (Basel) (09.12.2022)
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Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
Ludden, Catherine, Reuter, Sandra, Judge, Kim, Gouliouris, Theodore, Blane, Beth, Coll, Francesc, Naydenova, Plamena, Hunt, Martin, Tracey, Alan, Hopkins, Katie L, Brown, Nicholas M, Woodford, Neil, Parkhill, Julian, Peacock, Sharon J
Published in Microbial genomics (01.07.2017)
Published in Microbial genomics (01.07.2017)
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Journal Article
Multi-Drug Resistant Staphylococcus aureus Carriage in Abattoir Workers in Busia, Kenya
Obanda, Benear Apollo, Gibbons, Cheryl L, Fèvre, Eric M, Bebora, Lilly, Gitao, George, Ogara, William, Wang, Shu-Hua, Gebreyes, Wondwossen, Ngetich, Ronald, Blane, Beth, Coll, Francesc, Harrison, Ewan M, Kariuki, Samuel, Peacock, Sharon J, Cook, Elizabeth A J
Published in Antibiotics (Basel) (01.12.2022)
Published in Antibiotics (Basel) (01.12.2022)
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Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial
Emary, Katherine R W, Golubchik, Tanya, Aley, Parvinder K, Ariani, Cristina V, Angus, Brian, Bibi, Sagida, Blane, Beth, Bonsall, David, Cicconi, Paola, Charlton, Sue, Clutterbuck, Elizabeth A, Collins, Andrea M, Cox, Tony, Darton, Thomas C, Dold, Christina, Douglas, Alexander D, Duncan, Christopher J A, Ewer, Katie J, Flaxman, Amy L, Faust, Saul N, Ferreira, Daniela M, Feng, Shuo, Finn, Adam, Folegatti, Pedro M, Fuskova, Michelle, Galiza, Eva, Goodman, Anna L, Green, Catherine M, Green, Christopher A, Greenland, Melanie, Hallis, Bassam, Heath, Paul T, Hay, Jodie, Hill, Helen C, Jenkin, Daniel, Kerridge, Simon, Lazarus, Rajeka, Libri, Vincenzo, Lillie, Patrick J, Ludden, Catherine, Marchevsky, Natalie G, Minassian, Angela M, McGregor, Alastair C, Mujadidi, Yama F, Phillips, Daniel J, Plested, Emma, Pollock, Katrina M, Robinson, Hannah, Smith, Andrew, Song, Rinn, Snape, Matthew D, Sutherland, Rebecca K, Thomson, Emma C, Toshner, Mark, Turner, David P J, Vekemans, Johan, Villafana, Tonya L, Williams, Christopher J, Hill, Adrian V S, Lambe, Teresa, Gilbert, Sarah C, Voysey, Merryn, Ramasamy, Maheshi N, Pollard, Andrew J
Published in The Lancet (British edition) (10.04.2021)
Published in The Lancet (British edition) (10.04.2021)
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A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England
Ludden, Catherine, Moradigaravand, Danesh, Jamrozy, Dorota, Gouliouris, Theodore, Blane, Beth, Naydenova, Plamena, Hernandez-Garcia, Juan, Wood, Paul, Hadjirin, Nazreen, Radakovic, Milorad, Crawley, Charles, Brown, Nicholas M, Holmes, Mark, Parkhill, Julian, Peacock, Sharon J
Published in Clinical infectious diseases (02.01.2020)
Published in Clinical infectious diseases (02.01.2020)
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Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment
Gouliouris, Theodore, Raven, Kathy E, Moradigaravand, Danesh, Ludden, Catherine, Coll, Francesc, Blane, Beth, Naydenova, Plamena, Horner, Carolyne, Brown, Nicholas M, Corander, Jukka, Limmathurotsakul, Direk, Parkhill, Julian, Peacock, Sharon J
Published in Genome research (01.04.2019)
Published in Genome research (01.04.2019)
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