fMRIPrep: a robust preprocessing pipeline for functional MRI
Esteban, Oscar, Markiewicz, Christopher J., Blair, Ross W., Moodie, Craig A., Isik, A. Ilkay, Erramuzpe, Asier, Kent, James D., Goncalves, Mathias, DuPre, Elizabeth, Snyder, Madeleine, Oya, Hiroyuki, Ghosh, Satrajit S., Wright, Jessey, Durnez, Joke, Poldrack, Russell A., Gorgolewski, Krzysztof J.
Published in Nature methods (01.01.2019)
Published in Nature methods (01.01.2019)
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Analysis of task-based functional MRI data preprocessed with fMRIPrep
Esteban, Oscar, Ciric, Rastko, Finc, Karolina, Blair, Ross W., Markiewicz, Christopher J., Moodie, Craig A., Kent, James D., Goncalves, Mathias, DuPre, Elizabeth, Gomez, Daniel E. P., Ye, Zhifang, Salo, Taylor, Valabregue, Romain, Amlien, Inge K., Liem, Franziskus, Jacoby, Nir, Stojić, Hrvoje, Cieslak, Matthew, Urchs, Sebastian, Halchenko, Yaroslav O., Ghosh, Satrajit S., De La Vega, Alejandro, Yarkoni, Tal, Wright, Jessey, Thompson, William H., Poldrack, Russell A., Gorgolewski, Krzysztof J.
Published in Nature protocols (01.07.2020)
Published in Nature protocols (01.07.2020)
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The OpenNeuro resource for sharing of neuroscience data
Markiewicz, Christopher J, Gorgolewski, Krzysztof J, Feingold, Franklin, Blair, Ross, Halchenko, Yaroslav O, Miller, Eric, Hardcastle, Nell, Wexler, Joe, Esteban, Oscar, Goncavles, Mathias, Jwa, Anita, Poldrack, Russell
Published in eLife (18.10.2021)
Published in eLife (18.10.2021)
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Neuroscout, a unified platform for generalizable and reproducible fMRI research
de la Vega, Alejandro, Rocca, Roberta, Blair, Ross W, Markiewicz, Christopher J, Mentch, Jeff, Kent, James D, Herholz, Peer, Ghosh, Satrajit S, Poldrack, Russell A, Yarkoni, Tal
Published in eLife (30.08.2022)
Published in eLife (30.08.2022)
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Highlighting Hemodynamic Risks for Bioresorbable Stents in Coronary Arteries
Elliott, Marcus S, Cole, Jonathan S, Blair, Ross W, Menary, Gary H
Published in Fluids (Basel) (01.08.2023)
Published in Fluids (Basel) (01.08.2023)
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Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
Esteban, Oscar, Blair, Ross W., Nielson, Dylan M., Varada, Jan C., Marrett, Sean, Thomas, Adam G., Poldrack, Russell A., Gorgolewski, Krzysztof J.
Published in Scientific data (11.04.2019)
Published in Scientific data (11.04.2019)
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A sequence variant associated with sortilin-1 (SORT1) on 1p13.3 is independently associated with abdominal aortic aneurysm
Jones, Gregory T, Bown, Matthew J, Gretarsdottir, Solveig, Romaine, Simon P R, Helgadottir, Anna, Yu, Grace, Tromp, Gerard, Norman, Paul E, Jin, Cao, Baas, Annette F, Blankensteijn, Jan D, Kullo, Iftikhar J, Phillips, L Victoria, Williams, Michael J A, Topless, Ruth, Merriman, Tony R, Vasudevan, Thodor M, Lewis, David R, Blair, Ross D, Hill, Andrew A, Sayers, Robert D, Powell, Janet T, Deloukas, Panagiotis, Thorleifsson, Gudmar, Matthiasson, Stefan E, Thorsteinsdottir, Unnur, Golledge, Jonathan, Ariëns, Robert A, Johnson, Anne, Sohrabi, Soroush, Scott, D Julian, Carey, David J, Erdman, Robert, Elmore, James R, Kuivaniemi, Helena, Samani, Nilesh J, Stefansson, Kari, van Rij, Andre M
Published in Human molecular genetics (15.07.2013)
Published in Human molecular genetics (15.07.2013)
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Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data
Bourget, Marie-Hélène, Kamentsky, Lee, Ghosh, Satrajit S, Mazzamuto, Giacomo, Lazari, Alberto, Markiewicz, Christopher J, Oostenveld, Robert, Niso, Guiomar, Halchenko, Yaroslav O, Lipp, Ilona, Takerkart, Sylvain, Toussaint, Paule-Joanne, Khan, Ali R, Nilsonne, Gustav, Castelli, Filippo Maria, Cohen-Adad, Julien
Published in Frontiers in neuroscience (2022)
Published in Frontiers in neuroscience (2022)
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PET-BIDS, an extension to the brain imaging data structure for positron emission tomography
Norgaard, Martin, Matheson, Granville J., Hansen, Hanne D., Thomas, Adam, Searle, Graham, Rizzo, Gaia, Veronese, Mattia, Giacomel, Alessio, Yaqub, Maqsood, Tonietto, Matteo, Funck, Thomas, Gillman, Ashley, Boniface, Hugo, Routier, Alexandre, Dalenberg, Jelle R., Betthauser, Tobey, Feingold, Franklin, Markiewicz, Christopher J., Gorgolewski, Krzysztof J., Blair, Ross W., Appelhoff, Stefan, Gau, Remi, Salo, Taylor, Niso, Guiomar, Pernet, Cyril, Phillips, Christophe, Oostenveld, Robert, Gallezot, Jean-Dominique, Carson, Richard E., Knudsen, Gitte M., Innis, Robert B., Ganz, Melanie
Published in Scientific data (02.03.2022)
Published in Scientific data (02.03.2022)
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The past, present, and future of the brain imaging data structure (BIDS)
Poldrack, Russell A., Markiewicz, Christopher J., Appelhoff, Stefan, Ashar, Yoni K., Auer, Tibor, Baillet, Sylvain, Beltrachini, Leandro, Benar, Christian G., Bertazzoli, Giacomo, Bhogawar, Suyash, Blair, Ross W., Bortoletto, Marta, Boudreau, Mathieu, Calhoun, Vince D., Castelli, Filippo Maria, Clement, Patricia, Cohen-Adad, Julien, D’Ambrosio, Sasha, de Hollander, Gilles, de la Vega, Alejandro, Delorme, Arnaud, Devinsky, Orrin, Draschkow, Dejan, Duff, Eugene Paul, DuPre, Elizabeth, Earl, Eric, Esteban, Oscar, Feingold, Franklin W., Flandin, Guillaume, Galassi, Anthony, Gallitto, Giuseppe, Ganz, Melanie, Gau, Rémi, Gholam, James, Ghosh, Satrajit S., Giacomel, Alessio, Gillman, Ashley G., Gleeson, Padraig, Guay, Samuel, Guidali, Giacomo, Halchenko, Yaroslav O., Handwerker, Daniel A., Hardcastle, Nell, Herholz, Peer, Hermes, Dora, Honey, Christopher J., Innis, Robert B., Ioanas, Horea-Ioan, Jahn, Andrew, Karakuzu, Agah, Keator, David B., Kiar, Gregory, Kincses, Balint, Laird, Angela R., Lau, Jonathan C., Lazari, Alberto, Legarreta, Jon Haitz, Li, Adam, Li, Xiangrui, Love, Bradley C., Lu, Hanzhang, Marcantoni, Eleonora, Maumet, Camille, Meisler, Steven L., Mikkelsen, Mark, Mutsaerts, Henk, Nichols, Thomas E., Nikolaidis, Aki, Niso, Guiomar, Norgaard, Martin, Oostenveld, Robert, Ort, Eduard, Park, Patrick J., Pawlik, Mateusz, Pestilli, Franco, Phillips, Christophe, Pollonini, Luca, Raamana, Pradeep Reddy, Ritter, Petra, Rizzo, Gaia, Rockhill, Alexander P., Rogers, Christine, Rorden, Chris, Routier, Alexandre, Salo, Taylor, Schirner, Michael, Spisak, Tamas, Sprenger, Julia, Swann, Nicole C., Szinte, Martin, Takerkart, Sylvain, Thirion, Bertrand, Thomas, Adam G., Torabian, Sajjad, Varoquaux, Gael, Voytek, Bradley, Welzel, Julius, Wilson, Martin, Yarkoni, Tal, Gorgolewski, Krzysztof J.
Published in Imaging neuroscience (Cambridge, Mass.) (08.03.2024)
Published in Imaging neuroscience (Cambridge, Mass.) (08.03.2024)
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141. Neurosynth Compose: A Free an Open Platform for Precise Large-Scale Neuroimaging Meta-Analysis
Kent, James, Lee, Nicolas, Peraza, Julio, Salo, Taylor, Bottenhorn, Katherine, Dockès, Jerome, Blair, Ross, Oudyk, Kendra, Yu, Yifan, Nichols, Thomas, Laird, Angela, Poline, J.B., Yarkoni, Tal, De La Vega, Alejandro
Published in Biological psychiatry (1969) (15.05.2024)
Published in Biological psychiatry (1969) (15.05.2024)
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On the Long-term Archiving of Research Data
Pernet, Cyril, Svarer, Claus, Blair, Ross, Van Horn, John D., Poldrack, Russell A.
Published in Neuroinformatics (Totowa, N.J.) (01.04.2023)
Published in Neuroinformatics (Totowa, N.J.) (01.04.2023)
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Journal Article
FMRIPrep: a robust preprocessing pipeline for functional MRI
Esteban, Oscar, Markiewicz, Christopher, Blair, Ross W, Moodie, Craig, Isik, Ayse Ilkay, Aliaga, Asier Erramuzpe, Kent, James, Goncalves, Mathias, Dupre, Elizabeth, Snyder, Madeleine, Oya, Hiroyuki, Ghosh, Satrajit, Wright, Jessey, Durnez, Joke, Poldrack, Russell, Gorgolewski, Krzysztof Jacek
Published in bioRxiv (25.04.2018)
Published in bioRxiv (25.04.2018)
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Motion-BIDS: an extension to the brain imaging data structure to organize motion data for reproducible research
Jeung, Sein, Cockx, Helena, Appelhoff, Stefan, Berg, Timotheus, Gramann, Klaus, Grothkopp, Sören, Warmerdam, Elke, Hansen, Clint, Oostenveld, Robert, Welzel, Julius
Published in Scientific data (02.07.2024)
Published in Scientific data (02.07.2024)
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The genetics-BIDS extension: Easing the search for genetic data associated with human brain imaging
Moreau, Clara A, Jean-Louis, Martineau, Blair, Ross, Markiewicz, Christopher J, Turner, Jessica A, Calhoun, Vince D, Nichols, Thomas E, Pernet, Cyril R
Published in Gigascience (17.10.2020)
Published in Gigascience (17.10.2020)
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Journal Article
PET-BIDS, an extension to the brain imaging data structure for positron emission tomography
Norgaard, Martin, Matheson, Granville J, Hansen, Hanne D, Thomas, Adam, Searle, Graham, Rizzo, Gaia, Veronese, Mattia, Giacomel, Alessio, Yaqub, Maqsood, Tonietto, Matteo, Funck, Thomas, Gillman, Ashley, Boniface, Hugo, Routier, Alexandre, Dalenberg, Jelle R, Tobey Betthauser, Feingold, Franklin, Markiewicz, Christopher J, Gorgolewski, Krzysztof J, Blair, Ross W, Appelhoff, Stefan, Gau, Remi, Salo, Taylor, Niso, Guiomar, Pernet, Cyril, Phillips, Christophe, Oostenveld, Robert, Jean-Dominique Gallezot, Carson, Richard E, Knudsen, Gitte M, Innis, Robert B, Ganz, Melanie
Published in bioRxiv (17.06.2021)
Published in bioRxiv (17.06.2021)
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