A deep learning genome-mining strategy for biosynthetic gene cluster prediction
Hannigan, Geoffrey D, Prihoda, David, Palicka, Andrej, Soukup, Jindrich, Klempir, Ondrej, Rampula, Lena, Durcak, Jindrich, Wurst, Michael, Kotowski, Jakub, Chang, Dan, Wang, Rurun, Piizzi, Grazia, Temesi, Gergely, Hazuda, Daria J, Woelk, Christopher H, Bitton, Danny A
Published in Nucleic acids research (10.10.2019)
Published in Nucleic acids research (10.10.2019)
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BioPhi: A platform for antibody design, humanization, and humanness evaluation based on natural antibody repertoires and deep learning
Prihoda, David, Maamary, Jad, Waight, Andrew, Juan, Veronica, Fayadat-Dilman, Laurence, Svozil, Daniel, Bitton, Danny A
Published in mAbs (2022)
Published in mAbs (2022)
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The genomic and phenotypic diversity of Schizosaccharomyces pombe
Jeffares, Daniel C, Rallis, Charalampos, Rieux, Adrien, Speed, Doug, Převorovský, Martin, Mourier, Tobias, Marsellach, Francesc X, Iqbal, Zamin, Lau, Winston, Cheng, Tammy M K, Pracana, Rodrigo, Mülleder, Michael, Lawson, Jonathan L D, Chessel, Anatole, Bala, Sendu, Hellenthal, Garrett, O'Fallon, Brendan, Keane, Thomas, Simpson, Jared T, Bischof, Leanne, Tomiczek, Bartlomiej, Bitton, Danny A, Sideri, Theodora, Codlin, Sandra, Hellberg, Josephine E E U, van Trigt, Laurent, Jeffery, Linda, Li, Juan-Juan, Atkinson, Sophie, Thodberg, Malte, Febrer, Melanie, McLay, Kirsten, Drou, Nizar, Brown, William, Hayles, Jacqueline, Salas, Rafael E Carazo, Ralser, Markus, Maniatis, Nikolas, Balding, David J, Balloux, Francois, Durbin, Richard, Bähler, Jürg
Published in Nature genetics (01.03.2015)
Published in Nature genetics (01.03.2015)
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Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast
Atkinson, Sophie R, Marguerat, Samuel, Bitton, Danny A, Rodríguez-López, Maria, Rallis, Charalampos, Lemay, Jean-François, Cotobal, Cristina, Malecki, Michal, Smialowski, Pawel, Mata, Juan, Korber, Philipp, Bachand, François, Bähler, Jürg
Published in RNA (Cambridge) (01.09.2018)
Published in RNA (Cambridge) (01.09.2018)
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A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties
Waight, Andrew B., Prihoda, David, Shrestha, Rojan, Metcalf, Kevin, Bailly, Marc, Ancona, Marco, Widatalla, Talal, Rollins, Zachary, Cheng, Alan C, Bitton, Danny A., Fayadat-Dilman, Laurence
Published in mAbs (31.12.2023)
Published in mAbs (31.12.2023)
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Functional and regulatory profiling of energy metabolism in fission yeast
Malecki, Michal, Bitton, Danny A, Rodríguez-López, Maria, Rallis, Charalampos, Calavia, Noelia Garcia, Smith, Graeme C, Bähler, Jürg
Published in Genome Biology (25.11.2016)
Published in Genome Biology (25.11.2016)
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AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast
Bitton, Danny A, Schubert, Falk, Dey, Shoumit, Okoniewski, Michal, Smith, Graeme C, Khadayate, Sanjay, Pancaldi, Vera, Wood, Valerie, Bähler, Jürg
Published in Frontiers in genetics (16.11.2015)
Published in Frontiers in genetics (16.11.2015)
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LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq
Bitton, Danny A, Rallis, Charalampos, Jeffares, Daniel C, Smith, Graeme C, Chen, Yuan Y C, Codlin, Sandra, Marguerat, Samuel, Bähler, Jürg
Published in Genome research (01.07.2014)
Published in Genome research (01.07.2014)
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Eight-channel iTRAQ Enables Comparison of the Activity of Six Leukemogenic Tyrosine Kinases
Pierce, Andrew, Unwin, Richard D., Evans, Caroline A., Griffiths, Stephen, Carney, Louise, Zhang, Liqun, Jaworska, Ewa, Lee, Chia-Fang, Blinco, David, Okoniewski, Michal J., Miller, Crispin J., Bitton, Danny A., Spooncer, Elaine, Whetton, Anthony D.
Published in Molecular & cellular proteomics (01.05.2008)
Published in Molecular & cellular proteomics (01.05.2008)
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mRNAid, an open-source platform for therapeutic mRNA design and optimization strategies
Vostrosablin, Nikita, Lim, Shuhui, Gopal, Pooja, Brazdilova, Kveta, Parajuli, Sushmita, Wei, Xiaona, Gromek, Anna, Prihoda, David, Spale, Martin, Muzdalo, Anja, Greig, Jamie, Yeo, Constance, Wardyn, Joanna, Mejzlik, Petr, Henry, Brian, Partridge, Anthony W, Bitton, Danny A
Published in NAR genomics and bioinformatics (01.03.2024)
Published in NAR genomics and bioinformatics (01.03.2024)
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Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence
Sideri, Theodora, Rallis, Charalampos, Bitton, Danny A, Lages, Bruno M, Suo, Fang, Rodríguez-López, María, Du, Li-Lin, Bähler, Jürg
Published in G3 : genes - genomes - genetics (2015)
Published in G3 : genes - genomes - genetics (2015)
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An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome
Bitton, Danny A, Smith, Duncan L, Connolly, Yvonne, Scutt, Paul J, Miller, Crispin J
Published in PloS one (28.01.2010)
Published in PloS one (28.01.2010)
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Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe
Bitton, Danny A, Grallert, Agnes, Scutt, Paul J, Yates, Tim, Li, Yaoyong, Bradford, James R, Hey, Yvonne, Pepper, Stuart D, Hagan, Iain M, Miller, Crispin J
Published in Molecular systems biology (20.12.2011)
Published in Molecular systems biology (20.12.2011)
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Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability
Bitton, Danny A, Wood, Valerie, Scutt, Paul J, Grallert, Agnes, Yates, Tim, Smith, Duncan L, Hagan, Iain M, Miller, Crispin J
Published in Genetics (Austin) (01.04.2011)
Published in Genetics (Austin) (01.04.2011)
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Structural and Functional Characterization of the N Terminus of Schizosaccharomyces pombe Cwf10
Livesay, S Brent, Collier, Scott E, Bitton, Danny A, Bähler, Jürg, Ohi, Melanie D
Published in Eukaryotic Cell (01.11.2013)
Published in Eukaryotic Cell (01.11.2013)
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Exon level integration of proteomics and microarray data
Bitton, Danny A, Okoniewski, Michał J, Connolly, Yvonne, Miller, Crispin J
Published in BMC bioinformatics (25.02.2008)
Published in BMC bioinformatics (25.02.2008)
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The application potential of machine learning and genomics for understanding natural product diversity, chemistry, and therapeutic translatability
Prihoda, David, Maritz, Julia M, Klempir, Ondrej, Dzamba, David, Woelk, Christopher H, Hazuda, Daria J, Bitton, Danny A, Hannigan, Geoffrey D
Published in Natural product reports (23.06.2021)
Published in Natural product reports (23.06.2021)
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Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains
Chen, Jun-Song, Beckley, Janel R, McDonald, Nathan A, Ren, Liping, Mangione, MariaSanta, Jang, Sylvia J, Elmore, Zachary C, Rachfall, Nicole, Feoktistova, Anna, Jones, Christine M, Willet, Alaina H, Guillen, Rodrigo, Bitton, Danny A, Bähler, Jürg, Jensen, Michael A, Rhind, Nick, Gould, Kathleen L
Published in G3 : genes - genomes - genetics (01.03.2015)
Published in G3 : genes - genomes - genetics (01.03.2015)
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Communicating computational workflows in a regulatory environment
Keeney, Jonathon G., Gulzar, Naila, Baker, Jack B., Klempir, Ondrej, Hannigan, Geoffrey D., Bitton, Danny A., Maritz, Julia M., King, Charles H.S., Patel, Janisha A., Duncan, Paul, Mazumder, Raja
Published in Drug discovery today (01.03.2024)
Published in Drug discovery today (01.03.2024)
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