Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity
Carbo, Adria, Hontecillas, Raquel, Kronsteiner, Barbara, Viladomiu, Monica, Pedragosa, Mireia, Lu, Pinyi, Philipson, Casandra W, Hoops, Stefan, Marathe, Madhav, Eubank, Stephen, Bisset, Keith, Wendelsdorf, Katherine, Jarrah, Abdul, Mei, Yongguo, Bassaganya-Riera, Josep
Published in PLoS computational biology (01.04.2013)
Published in PLoS computational biology (01.04.2013)
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Journal Article
Predictive computational modeling of the mucosal immune responses during Helicobacter pylori infection
Carbo, Adria, Bassaganya-Riera, Josep, Pedragosa, Mireia, Viladomiu, Monica, Marathe, Madhav, Eubank, Stephen, Wendelsdorf, Katherine, Bisset, Keith, Hoops, Stefan, Deng, Xinwei, Alam, Maksudul, Kronsteiner, Barbara, Mei, Yongguo, Hontecillas, Raquel
Published in PloS one (05.09.2013)
Published in PloS one (05.09.2013)
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Journal Article
Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection
Alam, Maksudul, Deng, Xinwei, Philipson, Casandra, Bassaganya-Riera, Josep, Bisset, Keith, Carbo, Adria, Eubank, Stephen, Hontecillas, Raquel, Hoops, Stefan, Mei, Yongguo, Abedi, Vida, Marathe, Madhav
Published in PloS one (01.09.2015)
Published in PloS one (01.09.2015)
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Journal Article
Indemics: An Interactive High-Performance Computing Framework for Data Intensive Epidemic Modeling
Bisset, Keith R, Chen, Jiangzhuo, Deodhar, Suruchi, Feng, Xizhou, Ma, Yifei, Marathe, Madhav V
Published in ACM transactions on modeling and computer simulation (01.01.2014)
Published in ACM transactions on modeling and computer simulation (01.01.2014)
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Journal Article
MPI-ACC: Accelerator-Aware MPI for Scientific Applications
Aji, Ashwin M., Panwar, Lokendra S., Feng Ji, Murthy, Karthik, Chabbi, Milind, Balaji, Pavan, Bisset, Keith R., Dinan, James, Wu-chun Feng, Mellor-Crummey, John, Xiaosong Ma, Thakur, Rajeev
Published in IEEE transactions on parallel and distributed systems (01.05.2016)
Published in IEEE transactions on parallel and distributed systems (01.05.2016)
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Journal Article
High-performance biocomputing for simulating the spread of contagion over large contact networks
Bisset, Keith R, Aji, Ashwin M, Marathe, Madhav V, Feng, Wu-chun
Published in BMC genomics (12.04.2012)
Published in BMC genomics (12.04.2012)
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Journal Article
EpiSimdemics: An efficient algorithm for simulating the spread of infectious disease over large realistic social networks
Barrett, Christopher L., Bisset, Keith R., Eubank, Stephen G., Xizhou Feng, Marathe, Madhav V.
Published in 2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2008)
Published in 2008 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (01.11.2008)
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Conference Proceeding
Cost Estimation of Parallel Constrained Producer-Consumer Algorithms
Kamal, Tariq, Bisset, Keith R., Butt, Ali R., Marathe, Madhav
Published in 2015 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (01.03.2015)
Published in 2015 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (01.03.2015)
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Conference Proceeding
Journal Article
Economic and social impact of influenza mitigation strategies by demographic class
Barrett, Chris, Bisset, Keith, Leidig, Jonathan, Marathe, Achla, Marathe, Madhav
Published in Epidemics (01.03.2011)
Published in Epidemics (01.03.2011)
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Journal Article
An Integrated Modeling Environment to Study the Coevolution of Networks, Individual Behavior, and Epidemics
Barrett, Chris, Bisset, Keith, Leidig, Jonathan, Marathe, Achla, Marathe, Madhav
Published in The AI magazine (22.03.2010)
Published in The AI magazine (22.03.2010)
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Journal Article
A simulation environment for the dynamic evaluation of disaster preparedness policies and interventions
Lewis, Bryan, Swarup, Samarth, Bisset, Keith, Eubank, Stephen, Marathe, Madhav, Barrett, Chris
Published in Journal of public health management and practice (01.09.2013)
Published in Journal of public health management and practice (01.09.2013)
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Journal Article
Systems Modeling of Molecular Mechanisms Controlling Cytokine-driven CD4+ T Cell Differentiation and Phenotype Plasticity: e1003027
Carbo, Adria, Hontecillas, Raquel, Kronsteiner, Barbara, Viladomiu, Monica, Pedragosa, Mireia, Lu, Pinyi, Philipson, Casandra W, Hoops, Stefan, Marathe, Madhav, Eubank, Stephen, Bisset, Keith, Wendelsdorf, Katherine, Jarrah, Abdul, Mei, Yongguo, Bassaganya-Riera, Josep
Published in PLoS computational biology (01.04.2013)
Published in PLoS computational biology (01.04.2013)
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Journal Article
High performance informatics for pandemic preparedness
Bisset, Keith R., Eubank, Stephen, Marathe, Madhav V.
Published in Proceedings of the 2012 Winter Simulation Conference (WSC) (01.12.2012)
Published in Proceedings of the 2012 Winter Simulation Conference (WSC) (01.12.2012)
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Conference Proceeding
TRAM: Optimizing Fine-Grained Communication with Topological Routing and Aggregation of Messages
Wesolowski, Lukasz, Venkataraman, Ramprasad, Gupta, Abhishek, Jae-Seung Yeom, Bisset, Keith, Yanhua Sun, Jetley, Pritish, Quinn, Thomas R., Kale, Laxmikant V.
Published in 2014 43rd International Conference on Parallel Processing (01.09.2014)
Published in 2014 43rd International Conference on Parallel Processing (01.09.2014)
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Conference Proceeding
Load analysis and cost estimation of parallel constrained producer-consumer algorithms
Kamal, Tariq, Bisset, Keith R., Butt, Ali R., Marathe, Madhav V.
Published in 2014 IEEE International Conference on Cluster Computing (CLUSTER) (01.09.2014)
Published in 2014 IEEE International Conference on Cluster Computing (CLUSTER) (01.09.2014)
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Conference Proceeding