Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis
Xie, Weisi, Reder, Nicholas P, Koyuncu, Can, Leo, Patrick, Hawley, Sarah, Huang, Hongyi, Mao, Chenyi, Postupna, Nadia, Kang, Soyoung, Serafin, Robert, Gao, Gan, Han, Qinghua, Bishop, Kevin W, Barner, Lindsey A, Fu, Pingfu, Wright, Jonathan L, Keene, C Dirk, Vaughan, Joshua C, Janowczyk, Andrew, Glaser, Adam K, Madabhushi, Anant, True, Lawrence D, Liu, Jonathan T C
Published in Cancer research (Chicago, Ill.) (15.01.2022)
Published in Cancer research (Chicago, Ill.) (15.01.2022)
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Journal Article
In vivo microscopy as an adjunctive tool to guide detection, diagnosis, and treatment
Bishop, Kevin W, Maitland, Kristen C, Rajadhyaksha, Milind, Liu, Jonathan T. C
Published in Journal of biomedical optics (01.04.2022)
Published in Journal of biomedical optics (01.04.2022)
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Journal Article
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues
Glaser, Adam K., Bishop, Kevin W., Barner, Lindsey A., Susaki, Etsuo A., Kubota, Shimpei I., Gao, Gan, Serafin, Robert B., Balaram, Pooja, Turschak, Emily, Nicovich, Philip R., Lai, Hoyin, Lucas, Luciano A. G., Yi, Yating, Nichols, Eva K., Huang, Hongyi, Reder, Nicholas P., Wilson, Jasmine J., Sivakumar, Ramya, Shamskhou, Elya, Stoltzfus, Caleb R., Wei, Xing, Hempton, Andrew K., Pende, Marko, Murawala, Prayag, Dodt, Hans-Ulrich, Imaizumi, Takato, Shendure, Jay, Beliveau, Brian J., Gerner, Michael Y., Xin, Li, Zhao, Hu, True, Lawrence D., Reid, R. Clay, Chandrashekar, Jayaram, Ueda, Hiroki R., Svoboda, Karel, Liu, Jonathan T. C.
Published in Nature methods (01.05.2022)
Published in Nature methods (01.05.2022)
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Journal Article
Microdissected "cuboids" for microfluidic drug testing of intact tissues
Horowitz, Lisa F, Rodriguez, Adan D, Au-Yeung, Allan, Bishop, Kevin W, Barner, Lindsey A, Mishra, Gargi, Raman, Aashik, Delgado, Priscilla, Liu, Jonathan T. C, Gujral, Taranjit S, Mehrabi, Mehdi, Yang, Mengsu, Pierce, Robert H, Folch, Albert
Published in Lab on a chip (05.01.2021)
Published in Lab on a chip (05.01.2021)
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Journal Article
Axially swept open-top light-sheet microscopy for densely labeled clinical specimens
Bishop, Kevin W, Erion Barner, Lindsey A, Baraznenok, Elena, Lan, Lydia, Poudel, Chetan, Brenes, David, Serafin, Robert B, True, Lawrence D, Vaughan, Joshua C, Glaser, Adam K, Liu, Jonathan T C
Published in Optics letters (01.07.2024)
Published in Optics letters (01.07.2024)
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Journal Article
Comprehensive surface histology of fresh resection margins with rapid open-top light-sheet (OTLS) microscopy
Gao, Gan, Miyasato, Dominie, Barner, Lindsey A., Serafin, Robert, Bishop, Kevin W., Xie, Weisi, Glaser, Adam K., Rosenthal, Eben L., True, Lawrence D., Liu, Jonathan T.C.
Published in IEEE transactions on biomedical engineering (01.07.2023)
Published in IEEE transactions on biomedical engineering (01.07.2023)
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Journal Article
An end-to-end workflow for nondestructive 3D pathology
Bishop, Kevin W., Erion Barner, Lindsey A., Han, Qinghua, Baraznenok, Elena, Lan, Lydia, Poudel, Chetan, Gao, Gan, Serafin, Robert B., Chow, Sarah S. L., Glaser, Adam K., Janowczyk, Andrew, Brenes, David, Huang, Hongyi, Miyasato, Dominie, True, Lawrence D., Kang, Soyoung, Vaughan, Joshua C., Liu, Jonathan T. C.
Published in Nature protocols (01.04.2024)
Published in Nature protocols (01.04.2024)
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Journal Article
Direct three-dimensional segmentation of prostate glands with nnU-Net
Wang, Rui, Chow, Sarah S L, Serafin, Robert B, Xie, Weisi, Han, Qinghua, Baraznenok, Elena, Lan, Lydia, Bishop, Kevin W, Liu, Jonathan T C
Published in Journal of biomedical optics (01.03.2024)
Published in Journal of biomedical optics (01.03.2024)
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Journal Article
Quantitative tumor depth determination using dual wavelength excitation fluorescence
O'Brien, Christine M, Bishop, Kevin W, Zhang, Haini, Xu, Xiao, Shmuylovich, Leo, Conley, Elizabeth, Nwosu, Karen, Duncan, Kathleen, Mondal, Suman B, Sudlow, Gail, Achilefu, Samuel
Published in Biomedical optics express (01.11.2022)
Published in Biomedical optics express (01.11.2022)
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Journal Article
Miniature line-scanned dual-axis confocal microscope for versatile clinical use
Bishop, Kevin W, Hu, Bingwen, Vyawhare, Rajat, Yang, Zelin, Liang, David C, Gao, Gan, Baraznenok, Elena, Han, Qinghua, Lan, Lydia, Chow, Sarah S L, Sanai, Nader, Liu, Jonathan T C
Published in Biomedical optics express (01.11.2023)
Published in Biomedical optics express (01.11.2023)
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Journal Article
An end-to-end workflow for non-destructive 3D pathology
Bishop, Kevin W, Barner, Lindsey A Erion, Han, Qinghua, Baraznenok, Elena, Lan, Lydia, Poudel, Chetan, Gao, Gan, Serafin, Robert B, Chow, Sarah S L, Glaser, Adam K, Janowczyk, Andrew, Brenes, David, Huang, Hongyi, Miyasato, Dominie, True, Lawrence D, Kang, Soyoung, Vaughan, Joshua C, Liu, Jonathan T C
Published in bioRxiv (06.08.2023)
Published in bioRxiv (06.08.2023)
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Journal Article
Prostate cancer risk stratification via non-destructive 3D pathology with deep learning-assisted gland analysis
Xie, Weisi, Reder, Nicholas P., Koyuncu, Can, Leo, Patrick, Hawley, Sarah, Huang, Hongyi, Mao, Chenyi, Postupna, Nadia, Kang, Soyoung, Serafin, Robert, Gao, Gan, Han, Qinghua, Bishop, Kevin W., Barner, Lindsey A., Fu, Pingfu, Wright, Jonathan L., Keene, C. Dirk, Vaughan, Joshua C., Janowczyk, Andrew, Glaser, Adam K., Madabhushi, Anant, True, Lawrence D., Liu, Jonathan T.C.
Published in Cancer research (Chicago, Ill.) (01.12.2021)
Published in Cancer research (Chicago, Ill.) (01.12.2021)
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Journal Article
Triage of 3D pathology data via 2.5D multiple-instance learning to guide pathologist assessments
Gao, Gan, Song, Andrew H., Wang, Fiona, Brenes, David, Wang, Rui, Chow, Sarah S.L., Bishop, Kevin W., True, Lawrence D., Mahmood, Faisal, Liu, Jonathan T.C.
Published in 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) (17.06.2024)
Published in 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) (17.06.2024)
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Conference Proceeding
Triage of 3D pathology data via 2.5D multiple-instance learning to guide pathologist assessments
Gao, Gan, Song, Andrew H, Wang, Fiona, Brenes, David, Wang, Rui, Chow, Sarah S. L, Bishop, Kevin W, True, Lawrence D, Mahmood, Faisal, Liu, Jonathan T. C
Year of Publication 11.06.2024
Year of Publication 11.06.2024
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Journal Article
Triage of 3D pathology data via 2.5D multiple-instance learning to guide pathologist assessments
Gao, Gan, Song, Andrew H, Wang, Fiona, Brenes, David, Wang, Rui, Chow, Sarah S L, Bishop, Kevin W, True, Lawrence D, Mahmood, Faisal, Liu, Jonathan T C
Published in arXiv.org (11.06.2024)
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Published in arXiv.org (11.06.2024)
Paper
A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues
Glaser, Adam K, Bishop, Kevin W, Barner, Lindsey A, Susaki, Etsuo A, Kubota, Shimpei I, Gao, Gan, Serafin, Robert B, Balaram, Pooja, Turschak, Emily, Nicovich, Philip R, Lai, Hoyin, Lucas, Luciano Ag, Yating Yi, Nichols, Eva K, Huang, Hongyi, Reder, Nicholas P, Wilson, Jasmine J, Sivakumar, Ramya, Shamskhou, Elya, Stoltzfus, Caleb R, Xing, Wei, Hempton, Andrew K, Pende, Marco, Murawala, Prayag, Dodt, Hans U, Imaizumi, Takato, Shendure, Jay, Beliveau, Brian J, Gerner, Michael Y, Li, Xin, Hu, Zhao, True, Lawrence D, Reid, R Clay, Chandrashekar, Jayaram, Ueda, Hiroki R, Svoboda, Karel, Liu, Jonathan Tc
Published in bioRxiv (13.09.2021)
Published in bioRxiv (13.09.2021)
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Stop the bleeding: Attacks on immigrants are attacks on all
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