Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry
Gebreyesus, Sofani Tafesse, Siyal, Asad Ali, Kitata, Reta Birhanu, Chen, Eric Sheng-Wen, Enkhbayar, Bayarmaa, Angata, Takashi, Lin, Kuo-I, Chen, Yu-Ju, Tu, Hsiung-Lin
Published in Nature communications (10.01.2022)
Published in Nature communications (10.01.2022)
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Journal Article
A data-independent acquisition-based global phosphoproteomics system enables deep profiling
Kitata, Reta Birhanu, Choong, Wai-Kok, Tsai, Chia-Feng, Lin, Pei-Yi, Chen, Bo-Shiun, Chang, Yun-Chien, Nesvizhskii, Alexey I., Sung, Ting-Yi, Chen, Yu-Ju
Published in Nature communications (05.05.2021)
Published in Nature communications (05.05.2021)
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Journal Article
Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies
Xuan, Yue, Bateman, Nicholas W., Gallien, Sebastien, Goetze, Sandra, Zhou, Yue, Navarro, Pedro, Hu, Mo, Parikh, Niyati, Hood, Brian L., Conrads, Kelly A., Loosse, Christina, Kitata, Reta Birhanu, Piersma, Sander R., Chiasserini, Davide, Zhu, Hongwen, Hou, Guixue, Tahir, Muhammad, Macklin, Andrew, Khoo, Amanda, Sun, Xiuxuan, Crossett, Ben, Sickmann, Albert, Chen, Yu-Ju, Jimenez, Connie R., Zhou, Hu, Liu, Siqi, Larsen, Martin R., Kislinger, Thomas, Chen, Zhinan, Parker, Benjamin L., Cordwell, Stuart J., Wollscheid, Bernd, Conrads, Thomas P.
Published in Nature communications (16.10.2020)
Published in Nature communications (16.10.2020)
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Journal Article
Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling
Dimayacyac-Esleta, Baby Rorielyn T, Tsai, Chia-Feng, Kitata, Reta Birhanu, Lin, Pei-Yi, Choong, Wai-Kok, Lin, Tai-Du, Wang, Yi-Ting, Weng, Shao-Hsing, Yang, Pan-Chyr, Arco, Susan D, Sung, Ting-Yi, Chen, Yu-Ju
Published in Analytical chemistry (Washington) (15.12.2015)
Published in Analytical chemistry (Washington) (15.12.2015)
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Journal Article
Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis
Xu, Zhangyang, Peng, Bo, Kitata, Reta Birhanu, Nicora, Carrie D, Weitz, Karl K, Pu, Yunqiao, Shi, Tujin, Cort, John R, Ragauskas, Arthur J, Yang, Bin
Published in Biotechnology for biofuels (31.10.2022)
Published in Biotechnology for biofuels (31.10.2022)
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Journal Article
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics
Tsai, Chia-Feng, Wang, Yi-Ting, Hsu, Chuan-Chih, Kitata, Reta Birhanu, Chu, Rosalie K., Velickovic, Marija, Zhao, Rui, Williams, Sarah M., Chrisler, William B., Jorgensen, Marda L., Moore, Ronald J., Zhu, Ying, Rodland, Karin D., Smith, Richard D., Wasserfall, Clive H., Shi, Tujin, Liu, Tao
Published in Communications biology (18.01.2023)
Published in Communications biology (18.01.2023)
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Journal Article
Advances in data-independent acquisition mass spectrometry towards comprehensive digital proteome landscape
Kitata, Reta Birhanu, Yang, Jhih-Ci, Chen, Yu-Ju
Published in Mass spectrometry reviews (01.11.2023)
Published in Mass spectrometry reviews (01.11.2023)
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Journal Article
Multiplexed Quantitative Proteomics in Prostate Cancer Biomarker Development
Gao, Yuqian, Kim, Hyeyoon, Kitata, Reta Birhanu, Lin, Tai-Tu, Swensen, Adam C., Shi, Tujin, Liu, Tao
Year of Publication 01.07.2024
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Year of Publication 01.07.2024
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Sample Size-Comparable Spectral Library Enhances Data-Independent Acquisition-Based Proteome Coverage of Low-Input Cells
Siyal, Asad Ali, Chen, Eric Sheng-Wen, Chan, Hsin-Ju, Kitata, Reta Birhanu, Yang, Jhih-Ci, Tu, Hsiung-Lin, Chen, Yu-Ju
Published in Analytical chemistry (Washington) (28.12.2021)
Published in Analytical chemistry (Washington) (28.12.2021)
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Journal Article
In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum
Abhange, Komal, Kitata, Reta Birhanu, Zhang, Jie, Wang, Yi-Ting, Gaffrey, Matthew J., Liu, Tao, Gunchick, Valerie, Khaykin, Valerie, Sahai, Vaibhav, Cuneo, Kyle C., Parikh, Neehar D., Shi, Tujin, Lubman, David M.
Published in Journal of proteome research (05.01.2024)
Published in Journal of proteome research (05.01.2024)
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Journal Article
Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms
Kitata, Reta Birhanu, Hu, Lisa Y., Lin, Tai-Tu, Nicora, Carrie D., Fillmore, Thomas L., Nie, Song, Hudson, Robert D., Liu, Tao, Leach, Robin J., Liu, Alvin Y., Qian, Wei-Jun, Shi, Tujin
Published in Journal of proteome research (03.03.2023)
Published in Journal of proteome research (03.03.2023)
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Journal Article
Integrating site-specific peptide reporters and targeted mass spectrometry enables rapid substrate-specific kinase assay at the nanogram cell level
Reyes, Aaron James F., Kitata, Reta Birhanu, dela Rosa, Mira Anne C., Wang, Yi-Ting, Lin, Pei-Yi, Yang, Pan-Chyr, Friedler, Assaf, Yitzchaik, Shlomo, Chen, Yu-Ju
Published in Analytica chimica acta (22.04.2021)
Published in Analytica chimica acta (22.04.2021)
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Journal Article
Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins
Weldemariam, Mehari Muuz, Han, Chia-Li, Shekari, Faezeh, Kitata, Reta Birhanu, Chuang, Ching-Yu, Hsu, Wei-Ting, Kuo, Hung-Chih, Choong, Wai-Kok, Sung, Ting-Yi, He, Fu-Chu, Chung, Maxey Ching Ming, Salekdeh, Ghasem Hosseini, Chen, Yu-Ju
Published in Journal of proteome research (07.12.2018)
Published in Journal of proteome research (07.12.2018)
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Journal Article
Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry
Kitata, Reta Birhanu, Dimayacyac-Esleta, Baby Rorielyn T, Choong, Wai-Kok, Tsai, Chia-Feng, Lin, Tai-Du, Tsou, Chih-Chiang, Weng, Shao-Hsing, Chen, Yi-Ju, Yang, Pan-Chyr, Arco, Susan D, Nesvizhskii, Alexey I, Sung, Ting-Yi, Chen, Yu-Ju
Published in Journal of proteome research (04.09.2015)
Published in Journal of proteome research (04.09.2015)
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Journal Article
Robust collection and processing for label-free single voxel proteomics
Kitata, Reta Birhanu, Velickovic, Marija, Xu, Zhangyang, Zhao, Rui, Scholten, David, Chu, Rosalie K, Orton, Daniel J, Chrisler, William B, Mathews, Jeremy V, Piehowski, Paul D, Liu, Tao, Smith, Richard D, Liu, Huiping, Wasserfall, Clive H, Tsai, Chia-Feng, Shi, Tujin
Published in bioRxiv (15.08.2023)
Published in bioRxiv (15.08.2023)
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Journal Article
Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing
Humphrey, Jack, Brophy, Erica, Kosoy, Roman, Zeng, Biao, Coccia, Elena, Mattei, Daniele, Ravi, Ashvin, Efthymiou, Anastasia G, Navarro, Elisa, Muller, Benjamin Z, Snijders, Gijsje Jlj, Allan, Amanda, Münch, Alexandra, Kitata, Reta Birhanu, Kleopoulos, Steven P, Argyriou, Stathis, Shao, Zhiping, Francoeur, Nancy, Tsai, Chia-Feng, Gritsenko, Marina A, Monroe, Matthew E, Paurus, Vanessa L, Weitz, Karl K, Shi, Tujin, Sebra, Robert, Liu, Tao, de Witte, Lot D, Goate, Alison M, Bennett, David A, Haroutunian, Vahram, Hoffman, Gabriel E, Fullard, John F, Roussos, Panos, Raj, Towfique
Published in medRxiv : the preprint server for health sciences (01.12.2023)
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Published in medRxiv : the preprint server for health sciences (01.12.2023)
Journal Article
FACILE SAMPLE PREPARATION FOR QUANTITATIVE SINGLE-CELL PROTEOMICS
Shi, Tujin, Scholten, David, Kitata, Reta Birhanu, Liu, Huiping, Tsai, Chia-Feng, Reduzzi, Carolina
Year of Publication 25.08.2022
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Year of Publication 25.08.2022
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