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decoupleR: ensemble of computational methods to infer biological activities from omics data
Badia-i-Mompel, Pau, Vélez Santiago, Jesús, Braunger, Jana, Geiss, Celina, Dimitrov, Daniel, Müller-Dott, Sophia, Taus, Petr, Dugourd, Aurelien, Holland, Christian H, Ramirez Flores, Ricardo O, Saez-Rodriguez, Julio
Published in Bioinformatics advances (2022)
Published in Bioinformatics advances (2022)
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PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
Shang, Jiayu, Peng, Cheng, Liao, Herui, Tang, Xubo, Sun, Yanni
Published in Bioinformatics advances (2023)
Published in Bioinformatics advances (2023)
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qmotif: determination of telomere content from whole-genome sequence data
Holmes, Oliver, Nones, Katia, Tang, Yue Hang, Loffler, Kelly A, Lee, Michael, Patch, Ann-Marie, Dagg, Rebecca A, Lau, Loretta M S, Leonard, Conrad, Wood, Scott, Xu, Qinying, Pickett, Hilda A, Reddel, Roger R, Barbour, Andrew P, Grimmond, Sean M, Waddell, Nicola, Pearson, John V
Published in Bioinformatics Advances (2022)
Published in Bioinformatics Advances (2022)
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Light attention predicts protein location from the language of life
Stärk, Hannes, Dallago, Christian, Heinzinger, Michael, Rost, Burkhard
Published in Bioinformatics advances (2021)
Published in Bioinformatics advances (2021)
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MSPypeline: a python package for streamlined data analysis of mass spectrometry-based proteomics
Heming, Simon, Hansen, Pauline, Vlasov, Artyom, Schwörer, Florian, Schaumann, Stephen, Frolovaitė, Paulina, Lehmann, Wolf-Dieter, Timmer, Jens, Schilling, Marcel, Helm, Barbara, Klingmüller, Ursula
Published in Bioinformatics Advances (2022)
Published in Bioinformatics Advances (2022)
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nestedcv: an R package for fast implementation of nested cross-validation with embedded feature selection designed for transcriptomics and high-dimensional data
Lewis, Myles J, Spiliopoulou, Athina, Goldmann, Katriona, Pitzalis, Costantino, McKeigue, Paul, Barnes, Michael R
Published in Bioinformatics advances (2023)
Published in Bioinformatics advances (2023)
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COT: an efficient and accurate method for detecting marker genes among many subtypes
Lu, Yingzhou, Wu, Chiung-Ting, Parker, Sarah J, Cheng, Zuolin, Saylor, Georgia, Van Eyk, Jennifer E, Yu, Guoqiang, Clarke, Robert, Herrington, David M, Wang, Yue
Published in Bioinformatics advances (2022)
Published in Bioinformatics advances (2022)
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Compositional Data Analysis using Kernels in mass cytometry data
Rudra, Pratyaydipta, Baxter, Ryan, Hsieh, Elena W Y, Ghosh, Debashis
Published in Bioinformatics Advances (2022)
Published in Bioinformatics Advances (2022)
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From pairwise to multiple spliced alignment
Jammali, Safa, Djossou, Abigaïl, Ouédraogo, Wend-Yam D D, Nevers, Yannis, Chegrane, Ibrahim, Ouangraoua, Aïda
Published in Bioinformatics Advances (2022)
Published in Bioinformatics Advances (2022)
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Current and future directions in network biology
Zitnik, Marinka, Li, Michelle M, Wells, Aydin, Glass, Kimberly, Morselli Gysi, Deisy, Krishnan, Arjun, Murali, T M, Radivojac, Predrag, Roy, Sushmita, Baudot, Anaïs, Bozdag, Serdar, Chen, Danny Z, Cowen, Lenore, Devkota, Kapil, Gitter, Anthony, Gosline, Sara J C, Gu, Pengfei, Guzzi, Pietro H, Huang, Heng, Jiang, Meng, Kesimoglu, Ziynet Nesibe, Koyuturk, Mehmet, Ma, Jian, Pico, Alexander R, Pržulj, Nataša, Przytycka, Teresa M, Raphael, Benjamin J, Ritz, Anna, Sharan, Roded, Shen, Yang, Singh, Mona, Slonim, Donna K, Tong, Hanghang, Yang, Xinan Holly, Yoon, Byung-Jun, Yu, Haiyuan, Milenković, Tijana
Published in Bioinformatics advances (2024)
Published in Bioinformatics advances (2024)
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Identifying and classifying goals for scientific knowledge
Boguslav, Mayla R, Salem, Nourah M, White, Elizabeth K, Leach, Sonia M, Hunter, Lawrence E
Published in Bioinformatics Advances (2021)
Published in Bioinformatics Advances (2021)
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