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ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python
Zhang, She, Krieger, James M, Zhang, Yan, Kaya, Cihan, Kaynak, Burak, Mikulska-Ruminska, Karolina, Doruker, Pemra, Li, Hongchun, Bahar, Ivet
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MUFFIN: multi-scale feature fusion for drug–drug interaction prediction
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QUAST: quality assessment tool for genome assemblies
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Protein–protein interaction site prediction through combining local and global features with deep neural networks
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Accurate, scalable cohort variant calls using DeepVariant and GLnexus
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Impact of protein conformational diversity on AlphaFold predictions
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Published in Bioinformatics (13.05.2022)
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Rapid and precise alignment of raw reads against redundant databases with KMA
Clausen, Philip T. L. C., Aarestrup, Frank M., Lund, Ole
Published in BMC bioinformatics (29.08.2018)
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Ruiz-Perez, Daniel, Guan, Haibin, Madhivanan, Purnima, Mathee, Kalai, Narasimhan, Giri
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BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides
Charoenkwan, Phasit, Nantasenamat, Chanin, Hasan, Md Mehedi, Manavalan, Balachandran, Shoombuatong, Watshara
Published in Bioinformatics (Oxford, England) (09.09.2021)
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DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis
Yu, Guangchuang, Wang, Li-Gen, Yan, Guang-Rong, He, Qing-Yu
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Published in Bioinformatics (Oxford, England) (15.02.2015)
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