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A review of methods and databases for metagenomic classification and assembly
Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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The ACPYPE web server for small-molecule MD topology generation
Kagami, Luciano, Wilter, Alan, Diaz, Adrian, Vranken, Wim
Published in Bioinformatics (Oxford, England) (01.06.2023)
Published in Bioinformatics (Oxford, England) (01.06.2023)
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BERN2: an advanced neural biomedical named entity recognition and normalization tool
Sung, Mujeen, Jeong, Minbyul, Choi, Yonghwa, Kim, Donghyeon, Lee, Jinhyuk, Kang, Jaewoo
Published in Bioinformatics (Oxford, England) (14.10.2022)
Published in Bioinformatics (Oxford, England) (14.10.2022)
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Deep learning-based clustering approaches for bioinformatics
Karim, Md Rezaul, Beyan, Oya, Zappa, Achille, Costa, Ivan G, Rebholz-Schuhmann, Dietrich, Cochez, Michael, Decker, Stefan
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Schulz, Marcel H, Zerbino, Daniel R, Vingron, Martin, Birney, Ewan
Published in Bioinformatics (Oxford, England) (15.04.2012)
Published in Bioinformatics (Oxford, England) (15.04.2012)
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Gene co-expression analysis for functional classification and gene-disease predictions
van Dam, Sipko, Võsa, Urmo, van der Graaf, Adriaan, Franke, Lude, de Magalhães, João Pedro
Published in Briefings in bioinformatics (10.01.2017)
Published in Briefings in bioinformatics (10.01.2017)
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Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
Manzoni, Claudia, Kia, Demis A, Vandrovcova, Jana, Hardy, John, Wood, Nicholas W, Lewis, Patrick A, Ferrari, Raffaele
Published in Briefings in bioinformatics (01.03.2018)
Published in Briefings in bioinformatics (01.03.2018)
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proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
Hackl, Thomas, Hedrich, Rainer, Schultz, Jörg, Förster, Frank
Published in Bioinformatics (Oxford, England) (01.11.2014)
Published in Bioinformatics (Oxford, England) (01.11.2014)
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mlr3proba: an R package for machine learning in survival analysis
Sonabend, Raphael, Király, Franz J., Bender, Andreas, Bischl, Bernd, Lang, Michel
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
Weber, Leon, Sänger, Mario, Münchmeyer, Jannes, Habibi, Maryam, Leser, Ulf, Akbik, Alan
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA
Kelly, Brendan J., Gross, Robert, Bittinger, Kyle, Sherrill-Mix, Scott, Lewis, James D., Collman, Ronald G., Bushman, Frederic D., Li, Hongzhe
Published in Bioinformatics (01.08.2015)
Published in Bioinformatics (01.08.2015)
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FitDock: protein–ligand docking by template fitting
Yang, Xiaocong, Liu, Yang, Gan, Jianhong, Xiao, Zhi-Xiong, Cao, Yang
Published in Briefings in bioinformatics (13.05.2022)
Published in Briefings in bioinformatics (13.05.2022)
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Protein–protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique
Wang, Xiaoying, Yu, Bin, Ma, Anjun, Chen, Cheng, Liu, Bingqiang, Ma, Qin
Published in Bioinformatics (15.07.2019)
Published in Bioinformatics (15.07.2019)
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