Loading…
Loading…
Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
Zhu, Anqi, Ibrahim, Joseph G, Love, Michael I
Published in Bioinformatics (Oxford, England) (01.06.2019)
Published in Bioinformatics (Oxford, England) (01.06.2019)
Get full text
Journal Article
Loading…
Loading…
QMEANDisCo—distance constraints applied on model quality estimation
Studer, Gabriel, Rempfer, Christine, Waterhouse, Andrew M, Gumienny, Rafal, Haas, Juergen, Schwede, Torsten
Published in Bioinformatics (01.03.2020)
Published in Bioinformatics (01.03.2020)
Get full text
Journal Article
Loading…
LDpred2: better, faster, stronger
Privé, Florian, Arbel, Julyan, Vilhjálmsson, Bjarni J
Published in Bioinformatics (Oxford, England) (01.12.2020)
Published in Bioinformatics (Oxford, England) (01.12.2020)
Get full text
Journal Article
Loading…
microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization
Cao, Yang, Dong, Qingyang, Wang, Dan, Zhang, Pengcheng, Liu, Ying, Niu, Chao
Published in Bioinformatics (10.08.2022)
Published in Bioinformatics (10.08.2022)
Get full text
Journal Article
Loading…
CAFE 5 models variation in evolutionary rates among gene families
Mendes, Fábio K, Vanderpool, Dan, Fulton, Ben, Hahn, Matthew W
Published in Bioinformatics (Oxford, England) (01.12.2020)
Published in Bioinformatics (Oxford, England) (01.12.2020)
Get full text
Journal Article
Loading…
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
Chaumeil, Pierre-Alain, Mussig, Aaron J, Hugenholtz, Philip, Parks, Donovan H
Published in Bioinformatics (Oxford, England) (30.11.2022)
Published in Bioinformatics (Oxford, England) (30.11.2022)
Get full text
Journal Article
Loading…
Loading…
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
Sturm, Gregor, Finotello, Francesca, Petitprez, Florent, Zhang, Jitao David, Baumbach, Jan, Fridman, Wolf H, List, Markus, Aneichyk, Tatsiana
Published in Bioinformatics (15.07.2019)
Published in Bioinformatics (15.07.2019)
Get full text
Journal Article
Loading…
BBKNN: fast batch alignment of single cell transcriptomes
Polański, Krzysztof, Young, Matthew D, Miao, Zhichao, Meyer, Kerstin B, Teichmann, Sarah A, Park, Jong-Eun
Published in Bioinformatics (01.02.2020)
Published in Bioinformatics (01.02.2020)
Get full text
Journal Article
Loading…
IRscope: an online program to visualize the junction sites of chloroplast genomes
Amiryousefi, Ali, Hyvönen, Jaakko, Poczai, Peter
Published in Bioinformatics (Oxford, England) (01.09.2018)
Published in Bioinformatics (Oxford, England) (01.09.2018)
Get full text
Journal Article
Loading…
Loading…
Loading…
fastsimcoal2: demographic inference under complex evolutionary scenarios
Excoffier, Laurent, Marchi, Nina, Marques, David Alexander, Matthey-Doret, Remi, Gouy, Alexandre, Sousa, Vitor C
Published in Bioinformatics (15.12.2021)
Published in Bioinformatics (15.12.2021)
Get full text
Journal Article
Loading…
TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments
Chen, Lifan, Tan, Xiaoqin, Wang, Dingyan, Zhong, Feisheng, Liu, Xiaohong, Yang, Tianbiao, Luo, Xiaomin, Chen, Kaixian, Jiang, Hualiang, Zheng, Mingyue
Published in Bioinformatics (Oxford, England) (15.08.2020)
Published in Bioinformatics (Oxford, England) (15.08.2020)
Get full text
Journal Article
Loading…
CellProfiler 4: improvements in speed, utility and usability
Stirling, David R., Swain-Bowden, Madison J., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Goodman, Allen
Published in BMC bioinformatics (10.09.2021)
Published in BMC bioinformatics (10.09.2021)
Get full text
Journal Article
Loading…
pyGenomeTracks: reproducible plots for multivariate genomic datasets
Lopez-Delisle, Lucille, Rabbani, Leily, Wolff, Joachim, Bhardwaj, Vivek, Backofen, Rolf, Grüning, Björn, Ramírez, Fidel, Manke, Thomas
Published in Bioinformatics (Oxford, England) (20.04.2021)
Published in Bioinformatics (Oxford, England) (20.04.2021)
Get full text
Journal Article
Loading…
A multimodal deep learning framework for predicting drug–drug interaction events
Deng, Yifan, Xu, Xinran, Qiu, Yang, Xia, Jingbo, Zhang, Wen, Liu, Shichao
Published in Bioinformatics (Oxford, England) (01.08.2020)
Published in Bioinformatics (Oxford, England) (01.08.2020)
Get full text
Journal Article
Loading…
CoV-AbDab: the coronavirus antibody database
Raybould, Matthew I J, Kovaltsuk, Aleksandr, Marks, Claire, Deane, Charlotte M
Published in Bioinformatics (05.05.2021)
Published in Bioinformatics (05.05.2021)
Get full text
Journal Article