GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Bingol, Zulal, Alser, Mohammed, Mutlu, Onur, Ozturk, Ozcan, Alkan, Can
Published in IEEE transactions on computers (01.05.2024)
Published in IEEE transactions on computers (01.05.2024)
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Journal Article
Accelerating Genome Analysis: A Primer on an Ongoing Journey
Alser, Mohammed, Bingol, Zulal, Cali, Damla Senol, Kim, Jeremie, Ghose, Saugata, Alkan, Can, Mutlu, Onur
Published in IEEE MICRO (01.09.2020)
Published in IEEE MICRO (01.09.2020)
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Journal Article
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Cali, Damla Senol, Kalsi, Gurpreet S., Bingol, Zulal, Firtina, Can, Subramanian, Lavanya, Kim, Jeremie S., Ausavarungnirun, Rachata, Alser, Mohammed, Gomez-Luna, Juan, Boroumand, Amirali, Nori, Anant, Scibisz, Allison, Subramoney, Sreenivas, Alkan, Can, Ghose, Saugata, Mutlu, Onur
Published in 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture (MICRO) (01.10.2020)
Published in 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture (MICRO) (01.10.2020)
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Conference Proceeding
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Bingol, Zulal, Alser, Mohammed, Mutlu, Onur, Ozturk, Ozcan, Alkan, Can
Published in 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.06.2021)
Published in 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.06.2021)
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Conference Proceeding
Amplifying Main Memory-Based Timing Covert and Side Channels using Processing-in-Memory Operations
Kanellopoulos, Konstantinos, Bostanci, F. Nisa, Olgun, Ataberk, Yaglikci, A. Giray, Yuksel, Ismail Emir, Ghiasi, Nika Mansouri, Bingol, Zulal, Sadrosadati, Mohammad, Mutlu, Onur
Year of Publication 17.04.2024
Year of Publication 17.04.2024
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Journal Article
Amplifying Main Memory-Based Timing Covert and Side Channels using Processing-in-Memory Operations
Kanellopoulos, Konstantinos, F Nisa Bostanci, Olgun, Ataberk, A Giray Yaglikci, Ismail Emir Yuksel, Nika Mansouri Ghiasi, Bingol, Zulal, Sadrosadati, Mohammad, Mutlu, Onur
Published in arXiv.org (22.04.2024)
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Published in arXiv.org (22.04.2024)
Paper
GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping
Bingöl, Zülal, Alser, Mohammed, Mutlu, Onur, Ozturk, Ozcan, Alkan, Can
Published in arXiv.org (22.02.2024)
Published in arXiv.org (22.02.2024)
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Paper
Journal Article
Accelerating Genome Analysis: A Primer on an Ongoing Journey
Alser, Mohammed, Bingöl, Zülal, Cali, Damla Senol, Kim, Jeremie, Ghose, Saugata, Alkan, Can, Mutlu, Onur
Published in arXiv.org (22.09.2020)
Published in arXiv.org (22.09.2020)
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Paper
Journal Article
SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping
Cali, Damla Senol, Kanellopoulos, Konstantinos, Lindegger, Joel, Bingöl, Zülal, Kalsi, Gurpreet S, Zuo, Ziyi, Firtina, Can, Cavlak, Meryem Banu, Kim, Jeremie, Nika Mansouri Ghiasi, Singh, Gagandeep, Gómez-Luna, Juan, Nour Almadhoun Alserr, Alser, Mohammed, Sreenivas Subramoney, Alkan, Can, Ghose, Saugata, Mutlu, Onur
Published in arXiv.org (31.05.2022)
Published in arXiv.org (31.05.2022)
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Paper
Journal Article
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Cali, Damla Senol, Kalsi, Gurpreet S, Bingöl, Zülal, Firtina, Can, Subramanian, Lavanya, Kim, Jeremie S, Ausavarungnirun, Rachata, Alser, Mohammed, Gomez-Luna, Juan, Boroumand, Amirali, Nori, Anant, Scibisz, Allison, Subramoney, Sreenivas, Alkan, Can, Ghose, Saugata, Mutlu, Onur
Year of Publication 16.09.2020
Year of Publication 16.09.2020
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Journal Article
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Cali, Damla Senol, Kalsi, Gurpreet S, Bingöl, Zülal, Firtina, Can, Subramanian, Lavanya, Kim, Jeremie S, Ausavarungnirun, Rachata, Alser, Mohammed, Gomez-Luna, Juan, Boroumand, Amirali, Nori, Anant, Scibisz, Allison, Sreenivas Subramoney, Alkan, Can, Ghose, Saugata, Mutlu, Onur
Published in arXiv.org (16.09.2020)
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Published in arXiv.org (16.09.2020)
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