Integrative annotation of chromatin elements from ENCODE data
Hoffman, Michael M, Ernst, Jason, Wilder, Steven P, Kundaje, Anshul, Harris, Robert S, Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M, Bilmes, Jeffrey A, Birney, Ewan, Hardison, Ross C, Dunham, Ian, Kellis, Manolis, Noble, William Stafford
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
Get full text
Journal Article
Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
Yang, Rui, Das, Arnav, Gao, Vianne R, Karbalayghareh, Alireza, Noble, William S, Bilmes, Jeffrey A, Leslie, Christina S
Published in Genome Biology (06.06.2023)
Published in Genome Biology (06.06.2023)
Get full text
Journal Article
Author Correction: Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
Yang, Rui, Das, Arnav, Gao, Vianne R, Karbalayghareh, Alireza, Noble, William S, Bilmes, Jeffrey A, Leslie, Christina S
Published in Genome Biology (23.05.2024)
Published in Genome Biology (23.05.2024)
Get full text
Journal Article
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types
Libbrecht, Maxwell W, Rodriguez, Oscar L, Weng, Zhiping, Bilmes, Jeffrey A, Hoffman, Michael M, Noble, William Stafford
Published in Genome Biology (28.08.2019)
Published in Genome Biology (28.08.2019)
Get full text
Journal Article
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
Libbrecht, Maxwell W, Ay, Ferhat, Hoffman, Michael M, Gilbert, David M, Bilmes, Jeffrey A, Noble, William Stafford
Published in Genome research (01.04.2015)
Published in Genome research (01.04.2015)
Get full text
Journal Article
Segway 2.0: Gaussian mixture models and minibatch training
Chan, Rachel C W, Libbrecht, Maxwell W, Roberts, Eric G, Bilmes, Jeffrey A, Noble, William Stafford, Hoffman, Michael M
Published in Bioinformatics (15.02.2018)
Published in Bioinformatics (15.02.2018)
Get full text
Journal Article
Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies
Liu, Jie, Halloran, John T, Bilmes, Jeffrey A, Daza, Riza M, Lee, Choli, Mahen, Elisabeth M, Prunkard, Donna, Song, Chaozhong, Blau, Sibel, Dorschner, Michael O, Gadi, Vijayakrishna K, Shendure, Jay, Blau, C Anthony, Noble, William S
Published in Scientific reports (05.12.2017)
Published in Scientific reports (05.12.2017)
Get full text
Journal Article
Linking cells across single-cell modalities by synergistic matching of neighborhood structure
Hristov, Borislav H, Bilmes, Jeffrey A, Noble, William Stafford
Published in Bioinformatics (16.09.2022)
Published in Bioinformatics (16.09.2022)
Get full text
Journal Article
MS1Connect: a mass spectrometry run similarity measure
Lin, Andy, Deatherage Kaiser, Brooke L, Hutchison, Janine R, Bilmes, Jeffrey A, Noble, William Stafford
Published in Bioinformatics (Oxford, England) (03.02.2023)
Published in Bioinformatics (Oxford, England) (03.02.2023)
Get full text
Journal Article
Choosing panels of genomics assays using submodular optimization
Wei, Kai, Libbrecht, Maxwell W, Bilmes, Jeffrey A, Noble, William Stafford
Published in Genome Biology (15.11.2016)
Published in Genome Biology (15.11.2016)
Get full text
Journal Article
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression
Libbrecht, Maxwell W, Ay, Ferhat, Hoffman, Michael M, Gilbert, David M, Bilmes, Jeffrey A, William Stafford Noble
Published in bioRxiv (09.12.2014)
Published in bioRxiv (09.12.2014)
Get full text
Paper