Comparison of the single-cell and single-nucleus hepatic myeloid landscape within decompensated cirrhosis patients
Van Melkebeke, Lukas, Verbeek, Jef, Bihary, Dora, Boesch, Markus, Boeckx, Bram, Feio-Azevedo, Rita, Smets, Lena, Wallays, Marie, Claus, Eveline, Bonne, Lawrence, Maleux, Geert, Govaere, Olivier, Korf, Hannelie, Lambrechts, Diether, van der Merwe, Schalk
Published in Frontiers in immunology (06.02.2024)
Published in Frontiers in immunology (06.02.2024)
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Journal Article
Transcription-dependent cohesin repositioning rewires chromatin loops in cellular senescence
Olan, Ioana, Parry, Aled J., Schoenfelder, Stefan, Narita, Masako, Ito, Yoko, Chan, Adelyne S. L., Slater, Guy St.C., Bihary, Dóra, Bando, Masashige, Shirahige, Katsuhiko, Kimura, Hiroshi, Samarajiwa, Shamith A., Fraser, Peter, Narita, Masashi
Published in Nature communications (27.11.2020)
Published in Nature communications (27.11.2020)
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Journal Article
A KLF6-driven transcriptional network links lipid homeostasis and tumour growth in renal carcinoma
Syafruddin, Saiful E., Rodrigues, Paulo, Vojtasova, Erika, Patel, Saroor A., Zaini, M. Nazhif, Burge, Johanna, Warren, Anne Y., Stewart, Grant D., Eisen, Tim, Bihary, Dóra, Samarajiwa, Shamith A., Vanharanta, Sakari
Published in Nature communications (11.03.2019)
Published in Nature communications (11.03.2019)
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Journal Article
Fumarate induces vesicular release of mtDNA to drive innate immunity
Zecchini, Vincent, Paupe, Vincent, Herranz-Montoya, Irene, Janssen, Joëlle, Wortel, Inge M. N., Morris, Jordan L., Ferguson, Ashley, Chowdury, Suvagata Roy, Segarra-Mondejar, Marc, Costa, Ana S. H., Pereira, Gonçalo C., Tronci, Laura, Young, Timothy, Nikitopoulou, Efterpi, Yang, Ming, Bihary, Dóra, Caicci, Federico, Nagashima, Shun, Speed, Alyson, Bokea, Kalliopi, Baig, Zara, Samarajiwa, Shamith, Tran, Maxine, Mitchell, Thomas, Johnson, Mark, Prudent, Julien, Frezza, Christian
Published in Nature (London) (16.03.2023)
Published in Nature (London) (16.03.2023)
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Journal Article
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence
Parry, Aled J., Hoare, Matthew, Bihary, Dóra, Hänsel-Hertsch, Robert, Smith, Stephen, Tomimatsu, Kosuke, Mannion, Elizabeth, Smith, Amy, D’Santos, Paula, Russell, I. Alasdair, Balasubramanian, Shankar, Kimura, Hiroshi, Samarajiwa, Shamith A., Narita, Masashi
Published in Nature communications (09.05.2018)
Published in Nature communications (09.05.2018)
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Journal Article
Exploring the role of stromal osmoregulation in cancer and disease using executable modelling
Shorthouse, David, Riedel, Angela, Kerr, Emma, Pedro, Luisa, Bihary, Dóra, Samarajiwa, Shamith, Martins, Carla P., Shields, Jacqueline, Hall, Benjamin A.
Published in Nature communications (01.08.2018)
Published in Nature communications (01.08.2018)
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Journal Article
The renal lineage factor PAX8 controls oncogenic signalling in kidney cancer
Patel, Saroor A., Hirosue, Shoko, Rodrigues, Paulo, Vojtasova, Erika, Richardson, Emma K., Ge, Jianfeng, Syafruddin, Saiful E., Speed, Alyson, Papachristou, Evangelia K., Baker, David, Clarke, David, Purvis, Stephenie, Wesolowski, Ludovic, Dyas, Anna, Castillon, Leticia, Caraffini, Veronica, Bihary, Dóra, Yong, Cissy, Harrison, David J., Stewart, Grant D., Machiela, Mitchell J., Purdue, Mark P., Chanock, Stephen J., Warren, Anne Y., Samarajiwa, Shamith A., Carroll, Jason S., Vanharanta, Sakari
Published in Nature (London) (30.06.2022)
Published in Nature (London) (30.06.2022)
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Journal Article
MHC Class I Molecules and Dendrin Are Upregulated in Primary FSGS Podocytes: TH-PO767
Deleersnijder, Dries, Bihary, Dora, Sprangers, Ben, Meijers, Björn K., Lambrechts, Diether, Van Craenenbroeck, Amaryllis H.
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Journal Article
Differential signal sensitivities can contribute to the stability of multispecies bacterial communities
Juhász, János, Bihary, Dóra, Jády, Attila, Pongor, Sándor, Ligeti, Balázs
Published in Biology direct (15.09.2017)
Published in Biology direct (15.09.2017)
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Journal Article
Locus-specific induction of gene expression from heterochromatin loci during cellular senescence
Tomimatsu, Kosuke, Bihary, Dóra, Olan, Ioana, Parry, Aled J, Schoenfelder, Stefan, Chan, Adelyne S L, Slater, Guy St C, Ito, Yoko, Rugg-Gunn, Peter J, Kirschner, Kristina, Bermejo-Rodriguez, Camino, Seko, Tomomi, Kugoh, Hiroyuki, Shiraishi, Ken, Sayama, Koji, Kimura, Hiroshi, Fraser, Peter, Narita, Masako, Samarajiwa, Shamith A, Narita, Masashi
Published in Nature aging (01.01.2022)
Published in Nature aging (01.01.2022)
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Journal Article
Modeling bacterial quorum sensing in open and closed environments: potential discrepancies between agar plate and culture flask experiments
Bihary, Dóra, Tóth, Marietta, Kerényi, Ádám, Venturi, Vittorio, Pongor, Sándor
Published in Journal of molecular modeling (01.07.2014)
Published in Journal of molecular modeling (01.07.2014)
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Journal Article
Locality versus globality in bacterial signalling: can local communication stabilize bacterial communities?
Venturi, Vittorio, Kerényi, Adám, Reiz, Beáta, Bihary, Dóra, Pongor, Sándor
Published in Biology direct (27.04.2010)
Published in Biology direct (27.04.2010)
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Journal Article
With-in patient comparison of single-cell versus single-nucleus sequencing on human transjugular liver biopsies
Van Melkebeke, Lukas, Verbeek, Jef, Bihary, Dóra, Boesch, Markus, Korf, Hannelie, Lambrechts, Diether, van der Merwe, Schalk
Published in Journal of hepatology (01.06.2023)
Published in Journal of hepatology (01.06.2023)
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Journal Article
FRI-389 - With-in patient comparison of single-cell versus single-nucleus sequencing on human transjugular liver biopsies
Van Melkebeke, Lukas, Verbeek, Jef, Bihary, Dóra, Boesch, Markus, Korf, Hannelie, Lambrechts, Diether, van der Merwe, Schalk
Published in Journal of hepatology (01.06.2023)
Published in Journal of hepatology (01.06.2023)
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Journal Article
TOP-328-YI Single-nucleus RNA sequencing of the liver identifies predictive markers to corticosteroid treatment in patients with severe alcohol-related hepatitis
Van Melkebeke, Lukas, Boesch, Markus, Korf, Hannelie, Ostyn, Tessa, Bihary, Dóra, Wallays, Marie, Feio-Azevedo, Rita, Boeckx, Bram, Smets, Lena, Reekmans, Ann, Colle, Isabelle, Van Malenstein, Hannah, Topal, Halit, Jaekers, Joris, Claus, Eveline, Bonne, Lawrence, Maleux, Geert, Roskams, Tania, Nevens, Frederik, Lambrechts, Diether, Govaere, Olivier, van der Merwe, Schalk, Verbeek, Jef
Published in Journal of hepatology (01.06.2024)
Published in Journal of hepatology (01.06.2024)
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Journal Article
Transcription-driven cohesin repositioning rewires chromatin loops in cellular senescence
Olan, Ioana, Parry, Aled J, Schoenfelder, Stefan, Narita, Masako, Ito, Yoko, Adelyne Sl Chan, Slater, Guy Stc, Bihary, Dóra, Bando, Masashige, Shirahige, Katsuhiko, Kimura, Hiroshi, Samarajiwa, Shamith A, Fraser, Peter, Narita, Masashi
Published in bioRxiv (30.10.2019)
Published in bioRxiv (30.10.2019)
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Paper
Abstract A015: Injury-associated transcriptional state transitions in early renal carcinogenesis
Hirosue, Shoko, Ge, Jianfeng, Castillon, Leticia, Rodrigues, Paulo, Bihary, Dóra, Speed, Alyson, Wesolowski, Ludovic, Caraffini, Veronica, Warren, Anne Y., Stewart, Grant D., Welsh, Sarah J., Mitchell, Thomas J., Matakidou, Athena, Seyednasrollah, Fatemeh S., Samarajiwa, Shamith A., Vanharanta, Sakari
Published in Cancer research (Chicago, Ill.) (15.08.2023)
Published in Cancer research (Chicago, Ill.) (15.08.2023)
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Journal Article
Abstract PR002: Injury-associated transcriptional state transitions in early renal carcinogenesis
Hirosue, Shoko, Ge, Jianfeng, Castillon, Leticia, Rodrigues, Paulo, Bihary, Dóra, Speed, Alyson, Wesolowski, Ludovic, Caraffini, Veronica, Warren, Anne Y., Stewart, Grant D., Welsh, Sarah J., Mitchell, Thomas J., Matakidou, Athena, Seyednasrollah, Fatemeh S., Samarajiwa, Shamith A., Vanharanta, Sakari
Published in Cancer research (Chicago, Ill.) (15.08.2023)
Published in Cancer research (Chicago, Ill.) (15.08.2023)
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Journal Article