Proteomics Quality Control: Quality Control Software for MaxQuant Results
Bielow, Chris, Mastrobuoni, Guido, Kempa, Stefan
Published in Journal of proteome research (04.03.2016)
Published in Journal of proteome research (04.03.2016)
Get full text
Journal Article
Integrative functional genomics decodes herpes simplex virus 1
Whisnant, Adam W., Jürges, Christopher S., Hennig, Thomas, Wyler, Emanuel, Prusty, Bhupesh, Rutkowski, Andrzej J., L’hernault, Anne, Djakovic, Lara, Göbel, Margarete, Döring, Kristina, Menegatti, Jennifer, Antrobus, Robin, Matheson, Nicholas J., Künzig, Florian W. H., Mastrobuoni, Guido, Bielow, Chris, Kempa, Stefan, Liang, Chunguang, Dandekar, Thomas, Zimmer, Ralf, Landthaler, Markus, Grässer, Friedrich, Lehner, Paul J., Friedel, Caroline C., Erhard, Florian, Dölken, Lars
Published in Nature communications (27.04.2020)
Published in Nature communications (27.04.2020)
Get full text
Journal Article
Extensive identification and analysis of conserved small ORFs in animals
Mackowiak, Sebastian D, Zauber, Henrik, Bielow, Chris, Thiel, Denise, Kutz, Kamila, Calviello, Lorenzo, Mastrobuoni, Guido, Rajewsky, Nikolaus, Kempa, Stefan, Selbach, Matthias, Obermayer, Benedikt
Published in Genome Biology (14.09.2015)
Published in Genome Biology (14.09.2015)
Get full text
Journal Article
Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics
Wilmes, Anja, Bielow, Chris, Ranninger, Christina, Bellwon, Patricia, Aschauer, Lydia, Limonciel, Alice, Chassaigne, Hubert, Kristl, Theresa, Aiche, Stephan, Huber, Christian G., Guillou, Claude, Hewitt, Philipp, Leonard, Martin O., Dekant, Wolfgang, Bois, Frederic, Jennings, Paul
Published in Toxicology in vitro (25.12.2015)
Published in Toxicology in vitro (25.12.2015)
Get full text
Journal Article
Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer
Berndt, Nikolaus, Egners, Antje, Mastrobuoni, Guido, Vvedenskaya, Olga, Fragoulis, Athanassios, Dugourd, Aurélien, Bulik, Sascha, Pietzke, Matthias, Bielow, Chris, van Gassel, Rob, Damink, Steven W. Olde, Erdem, Merve, Saez-Rodriguez, Julio, Holzhütter, Hermann-Georg, Kempa, Stefan, Cramer, Thorsten
Published in British journal of cancer (01.01.2020)
Published in British journal of cancer (01.01.2020)
Get full text
Journal Article
Application of integrated transcriptomic, proteomic and metabolomic profiling for the delineation of mechanisms of drug induced cell stress
Wilmes, Anja, Limonciel, Alice, Aschauer, Lydia, Moenks, Konrad, Bielow, Chris, Leonard, Martin O., Hamon, Jeremy, Carpi, Donatella, Ruzek, Silke, Handler, Andreas, Schmal, Olga, Herrgen, Karin, Bellwon, Patricia, Burek, Christof, Truisi, Germaine L., Hewitt, Philip, Di Consiglio, Emma, Testai, Emanuela, Blaauboer, Bas J., Guillou, Claude, Huber, Christian G., Lukas, Arno, Pfaller, Walter, Mueller, Stefan O., Bois, Frederic Y., Dekant, Wolfgang, Jennings, Paul
Published in Journal of proteomics (21.02.2013)
Published in Journal of proteomics (21.02.2013)
Get full text
Journal Article
Evaluation of drug-induced neurotoxicity based on metabolomics, proteomics and electrical activity measurements in complementary CNS in vitro models
Schultz, Luise, Zurich, Marie-Gabrielle, Culot, Maxime, da Costa, Anaelle, Landry, Christophe, Bellwon, Patricia, Kristl, Theresa, Hörmann, Katrin, Ruzek, Silke, Aiche, Stephan, Reinert, Knut, Bielow, Chris, Gosselet, Fabien, Cecchelli, Romeo, Huber, Christian G., Schroeder, Olaf H.-U., Gramowski-Voss, Alexandra, Weiss, Dieter G., Bal-Price, Anna
Published in Toxicology in vitro (25.12.2015)
Published in Toxicology in vitro (25.12.2015)
Get full text
Journal Article
TOPPAS: A Graphical Workflow Editor for the Analysis of High-Throughput Proteomics Data
Junker, Johannes, Bielow, Chris, Bertsch, Andreas, Sturm, Marc, Reinert, Knut, Kohlbacher, Oliver
Published in Journal of proteome research (06.07.2012)
Published in Journal of proteome research (06.07.2012)
Get full text
Journal Article
Rapid and Comprehensive Impurity Profiling of Synthetic Thyroxine by Ultrahigh-Performance Liquid Chromatography–High-Resolution Mass Spectrometry
Neu, Volker, Bielow, Chris, Gostomski, Iris, Wintringer, Reiner, Braun, Ralf, Reinert, Knut, Schneider, Peter, Stuppner, Hermann, Huber, Christian G
Published in Analytical chemistry (Washington) (19.03.2013)
Published in Analytical chemistry (Washington) (19.03.2013)
Get full text
Journal Article
Tools for Label-free Peptide Quantification
Nahnsen, Sven, Bielow, Chris, Reinert, Knut, Kohlbacher, Oliver
Published in Molecular & cellular proteomics (01.03.2013)
Published in Molecular & cellular proteomics (01.03.2013)
Get full text
Journal Article
On Mass Ambiguities in High-Resolution Shotgun Lipidomics
Bielow, Chris, Mastrobuoni, Guido, Orioli, Marica, Kempa, Stefan
Published in Analytical chemistry (Washington) (07.03.2017)
Published in Analytical chemistry (Washington) (07.03.2017)
Get full text
Journal Article
CMAPLE: Efficient Phylogenetic Inference in the Pandemic Era
Ly-Trong, Nhan, Bielow, Chris, De Maio, Nicola, Minh, Bui Quang
Published in Molecular biology and evolution (03.07.2024)
Published in Molecular biology and evolution (03.07.2024)
Get full text
Journal Article
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Röst, Hannes L, Sachsenberg, Timo, Aiche, Stephan, Bielow, Chris, Weisser, Hendrik, Aicheler, Fabian, Andreotti, Sandro, Ehrlich, Hans-Christian, Gutenbrunner, Petra, Kenar, Erhan, Liang, Xiao, Nahnsen, Sven, Nilse, Lars, Pfeuffer, Julianus, Rosenberger, George, Rurik, Marc, Schmitt, Uwe, Veit, Johannes, Walzer, Mathias, Wojnar, David, Wolski, Witold E, Schilling, Oliver, Choudhary, Jyoti S, Malmström, Lars, Aebersold, Ruedi, Reinert, Knut, Kohlbacher, Oliver
Published in Nature methods (01.09.2016)
Published in Nature methods (01.09.2016)
Get full text
Journal Article
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java
Bielow, Chris, Hoffmann, Nils, Jimenez-Morales, David, Van Den Bossche, Tim, Vizcaíno, Juan Antonio, Tabb, David L., Bittremieux, Wout, Walzer, Mathias
Published in Journal of the American Society for Mass Spectrometry (07.08.2024)
Published in Journal of the American Society for Mass Spectrometry (07.08.2024)
Get full text
Journal Article
MSSimulator: Simulation of Mass Spectrometry Data
Bielow, Chris, Aiche, Stephan, Andreotti, Sandro, Reinert, Knut
Published in Journal of proteome research (01.07.2011)
Published in Journal of proteome research (01.07.2011)
Get full text
Journal Article
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data
Pfeuffer, Julianus, Bielow, Chris, Wein, Samuel, Jeong, Kyowon, Netz, Eugen, Walter, Axel, Alka, Oliver, Nilse, Lars, Colaianni, Pasquale Domenico, McCloskey, Douglas, Kim, Jihyung, Rosenberger, George, Bichmann, Leon, Walzer, Mathias, Veit, Johannes, Boudaud, Bertrand, Bernt, Matthias, Patikas, Nikolaos, Pilz, Matteo, Startek, Michał Piotr, Kutuzova, Svetlana, Heumos, Lukas, Charkow, Joshua, Sing, Justin Cyril, Feroz, Ayesha, Siraj, Arslan, Weisser, Hendrik, Dijkstra, Tjeerd M. H., Perez-Riverol, Yasset, Röst, Hannes, Kohlbacher, Oliver, Sachsenberg, Timo
Published in Nature methods (01.03.2024)
Published in Nature methods (01.03.2024)
Get full text
Journal Article
Ultrahigh-performance liquid chromatography-ultraviolet absorbance detection-high-resolution-mass spectrometry combined with automated data processing for studying the kinetics of oxidative thermal degradation of thyroxine in the solid state
Neu, Volker, Bielow, Chris, Reinert, Knut, Huber, Christian G.
Published in Journal of Chromatography A (05.12.2014)
Published in Journal of Chromatography A (05.12.2014)
Get full text
Journal Article
Investigation of Reaction Mechanisms of Drug Degradation in the Solid State: A Kinetic Study Implementing Ultrahigh-Performance Liquid Chromatography and High-Resolution Mass Spectrometry for Thermally Stressed Thyroxine
Neu, Volker, Bielow, Chris, Schneider, Peter, Reinert, Knut, Stuppner, Hermann, Huber, Christian G
Published in Analytical chemistry (Washington) (19.02.2013)
Published in Analytical chemistry (Washington) (19.02.2013)
Get full text
Journal Article
Optimal Decharging and Clustering of Charge Ladders Generated in ESI−MS
Bielow, Chris, Ruzek, Silke, Huber, Christian G, Reinert, Knut
Published in Journal of proteome research (07.05.2010)
Published in Journal of proteome research (07.05.2010)
Get full text
Journal Article