Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya
Hassan, Amin S, Bibby, David F, Mwaringa, Shalton M, Agutu, Clara A, Ndirangu, Kennedy K, Sanders, Eduard J, Cane, Patricia A, Mbisa, Jean L, Berkley, James A
Published in PloS one (13.02.2019)
Published in PloS one (13.02.2019)
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Journal Article
Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping
Parkin, Neil T, Avila-Rios, Santiago, Bibby, David F, Brumme, Chanson J, Eshleman, Susan H, Harrigan, P Richard, Howison, Mark, Hunt, Gillian, Ji, Hezhao, Kantor, Rami, Ledwaba, Johanna, Lee, Emma R, Matías-Florentino, Margarita, Mbisa, Jean L, Noguera-Julian, Marc, Paredes, Roger, Rivera-Amill, Vanessa, Swanstrom, Ronald, Zaccaro, Daniel J, Zhang, Yinfeng, Zhou, Shuntai, Jennings, Cheryl
Published in Viruses (27.06.2020)
Published in Viruses (27.06.2020)
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Journal Article
Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing
Manso, Carmen F., Bibby, David F., Mohamed, Hodan, Brown, David W. G., Zuckerman, Mark, Mbisa, Jean L.
Published in Frontiers in microbiology (12.08.2020)
Published in Frontiers in microbiology (12.08.2020)
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Journal Article
Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway
Manso, Carmen F, Bibby, David F, Lythgow, Kieren, Mohamed, Hodan, Myers, Richard, Williams, David, Piorkowska, Renata, Chan, Yuen T, Bowden, Rory, Ansari, M Azim, Ip, Camilla L C, Barnes, Eleanor, Bradshaw, Daniel, Mbisa, Jean L
Published in Frontiers in microbiology (09.10.2020)
Published in Frontiers in microbiology (09.10.2020)
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Journal Article
A MIQE-compliant real-time PCR assay for Aspergillus detection
Johnson, Gemma L, Bibby, David F, Wong, Stephenie, Agrawal, Samir G, Bustin, Stephen A
Published in PloS one (10.07.2012)
Published in PloS one (10.07.2012)
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Journal Article
Interpreting Viral Deep Sequencing Data with GLUE
Singer, Joshua B, Thomson, Emma C, Hughes, Joseph, Aranday-Cortes, Elihu, McLauchlan, John, da Silva Filipe, Ana, Tong, Lily, Manso, Carmen F, Gifford, Robert J, Robertson, David L, Barnes, Eleanor, Ansari, M Azim, Mbisa, Jean L, Bibby, David F, Bradshaw, Daniel, Smith, David
Published in Viruses (03.04.2019)
Published in Viruses (03.04.2019)
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Journal Article
Comparative evaluation of the seegene seeplex RV15 and real-time PCR for respiratory virus detection
Bibby, David F., McElarney, Iain, Breuer, Judith, Clark, Duncan A.
Published in Journal of medical virology (01.08.2011)
Published in Journal of medical virology (01.08.2011)
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Journal Article
Molecular Investigations of an Outbreak of Parainfluenza Virus Type 3 and Respiratory Syncytial Virus Infections in a Hematology Unit
Jalal, Hamid, Bibby, David F, Bennett, Julie, Sampson, Rebecca E, Brink, Nicola S, MacKinnon, Stephen, Tedder, Richard S, Ward, Katherine N
Published in Journal of Clinical Microbiology (01.06.2007)
Published in Journal of Clinical Microbiology (01.06.2007)
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Journal Article
Identification of two novel subtypes of hepatitis C virus genotype 8 and a potential new genotype successfully treated with direct acting antivirals
Mbisa, Jean L, Lapp, Zena, Bibby, David F, Phillips, Laura T, Manso, Carmen F, Packer, Simon, Simmons, Ruth, Harris, Kathryn, Mohan, Jaiganesh, Chinnappan, Lalitha, Leitner, Thomas, Bradshaw, Daniel
Published in The Journal of infectious diseases (08.05.2024)
Published in The Journal of infectious diseases (08.05.2024)
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Journal Article
Surveillance of HIV-1 transmitted integrase strand transfer inhibitor resistance in the UK
Mbisa, Jean L, Ledesma, Juan, Kirwan, Peter, Bibby, David F, Manso, Carmen, Skingsley, Andrew, Murphy, Gary, Brown, Alison, Dunn, David T, Delpech, Valerie, Geretti, Anna Maria
Published in Journal of antimicrobial chemotherapy (01.11.2020)
Published in Journal of antimicrobial chemotherapy (01.11.2020)
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Journal Article
Clinical evaluation of a Hepatitis C Virus whole-genome sequencing pipeline for genotyping and resistance testing
Bradshaw, Daniel, Bibby, David F., Manso, Carmen F., Piorkowska, Renata, Mohamed, Hodan, Ledesma, Juan, Bubba, Laura, Chan, Yuen T., Ngui, Siew Lin, Carne, Simon, Mbisa, Jean L.
Published in Clinical microbiology and infection (01.03.2022)
Published in Clinical microbiology and infection (01.03.2022)
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Journal Article
Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy
Smith, David A., Bradshaw, Daniel, Mbisa, Jean L, Manso, Carmen F., Bibby, David F, Singer, Joshua B, Thomson, Emma C, da Silva Filipe, Ana, Aranday‐Cortes, Elihu, Ansari, M. Azim, Brown, Anthony, Hudson, Emma, Benselin, Jennifer, Healy, Brendan, Troke, Phil, McLauchlan, John, Barnes, Eleanor, Irving, William L.
Published in Journal of viral hepatitis (01.09.2021)
Published in Journal of viral hepatitis (01.09.2021)
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Journal Article
First Reported Outbreak of Diarrhea Due to Adenovirus Infection in a Hematology Unit for Adults
Jalal, Hamid, Bibby, David F, Tang, Julian W, Bennett, Julie, Kyriakou, Chara, Peggs, Karl, Cubitt, David, Brink, Nicola S, Ward, Kate N, Tedder, Richard S
Published in Journal of Clinical Microbiology (01.06.2005)
Published in Journal of Clinical Microbiology (01.06.2005)
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Journal Article
Increased reports of severe myocarditis associated with enterovirus infection in neonates, United Kingdom, 27 June 2022 to 26 April 2023
Singanayagam, Anika, Moore, Catherine, Froude, Susannah, Celma, Cristina, Stowe, Julia, Hani, Erjola, Ng, Khuen Foong, Muir, Peter, Roderick, Marion, Cottrell, Simon, Bibby, David F., Vipond, Barry, Gillett, Sophie, Davis, Peter J., Gibb, Jack, Barry, Mai, Harris, Phillippa, Rowley, Frances, Song, Jiao, Shankar, Ananda Giri, McMichael, Danielle, Cohen, Jonathan M., Manian, Abirami, Harvey, Ciaran, Primrose, Louise Shaw, Wilson, Stefanie, Bradley, Declan T., Paranthaman, Karthik, Beard, Stuart, Zambon, Maria, Ramsay, Mary, Saliba, Vanessa, Ladhani, Shamez, Williams, Christopher
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (28.09.2023)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (28.09.2023)
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Journal Article
Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK
Cunningham, Emma, Chan, Yuen-Ting, Aghaizu, Adamma, Bibby, David F, Murphy, Gary, Tosswill, Jennifer, Harris, Ross J, Myers, Richard, Field, Nigel, Delpech, Valerie, Cane, Patricia A, Gill, O Noel, Mbisa, Jean L
Published in Journal of antimicrobial chemotherapy (01.01.2017)
Published in Journal of antimicrobial chemotherapy (01.01.2017)
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Journal Article
A European multi-centre External Quality Assessment (EQA) study on phenotypic and genotypic methods used for Herpes Simplex Virus (HSV) drug resistance testing
Afshar, Baharak, Bibby, David F., Piorkowska, Renata, Ohemeng-Kumi, Natasha, Snoeck, Robert, Andrei, Graciela, Gillemot, Sarah, Morfin, Florence, Frobert, Emilie, Burrel, Sonia, Boutolleau, David, Crowley, Brendan, Mbisa, Jean L.
Published in Journal of clinical virology (01.11.2017)
Published in Journal of clinical virology (01.11.2017)
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Journal Article
Determining the Origins of Human Immunodeficiency Virus Type 1 Drug-resistant Minority Variants in People Who Are Recently Infected Using Phylogenetic Reconstruction
Mbisa, Jean L, Kirwan, Peter, Tostevin, Anna, Ledesma, Juan, Bibby, David F, Brown, Alison, Myers, Richard, Hassan, Amin S, Murphy, Gary, Asboe, David, Pozniak, Anton, Kirk, Stuart, Gill, O Noel, Sabin, Caroline, Delpech, Valerie, Dunn, David T
Published in Clinical infectious diseases (13.09.2019)
Published in Clinical infectious diseases (13.09.2019)
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Journal Article
Disease Progression in HIV-1-Infected Viremic Controllers
Groves, Katherine C, Bibby, David F, Clark, Duncan A, Isaksen, Are, Deayton, Jane R, Anderson, Jane, Orkin, Chloe, Stagg, Andrew J, McKnight, Aine
Published in Journal of acquired immune deficiency syndromes (1999) (01.12.2012)
Published in Journal of acquired immune deficiency syndromes (1999) (01.12.2012)
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Application of a novel in vitro selection technique to isolate and characterise high affinity DNA aptamers binding mammalian prion proteins
Bibby, David F., Gill, Andrew C., Kirby, Louise, Farquhar, Christine F., Bruce, Moira E., Garson, Jeremy A.
Published in Journal of virological methods (01.07.2008)
Published in Journal of virological methods (01.07.2008)
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