A comparative study of evaluating missing value imputation methods in label-free proteomics
Jin, Liang, Bi, Yingtao, Hu, Chenqi, Qu, Jun, Shen, Shichen, Wang, Xue, Tian, Yu
Published in Scientific reports (19.01.2021)
Published in Scientific reports (19.01.2021)
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Journal Article
A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples
Chen, Wanqiu, Zhao, Yongmei, Chen, Xin, Yang, Zhaowei, Xu, Xiaojiang, Bi, Yingtao, Chen, Vicky, Li, Jing, Choi, Hannah, Ernest, Ben, Tran, Bao, Mehta, Monika, Kumar, Parimal, Farmer, Andrew, Mir, Alain, Mehra, Urvashi Ann, Li, Jian-Liang, Moos, Malcolm, Xiao, Wenming, Wang, Charles
Published in Nature biotechnology (01.09.2021)
Published in Nature biotechnology (01.09.2021)
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Journal Article
Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates
Farkas, Marina, Hashimoto, Hideharu, Bi, Yingtao, Davuluri, Ramana V., Resnick-Silverman, Lois, Manfredi, James J., Debler, Erik W., McMahon, Steven B.
Published in Nature communications (20.01.2021)
Published in Nature communications (20.01.2021)
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Journal Article
Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques
Macyszyn, Luke, Akbari, Hamed, Pisapia, Jared M, Da, Xiao, Attiah, Mark, Pigrish, Vadim, Bi, Yingtao, Pal, Sharmistha, Davuluri, Ramana V, Roccograndi, Laura, Dahmane, Nadia, Martinez-Lage, Maria, Biros, George, Wolf, Ronald L, Bilello, Michel, O'Rourke, Donald M, Davatzikos, Christos
Published in Neuro-oncology (Charlottesville, Va.) (01.03.2016)
Published in Neuro-oncology (Charlottesville, Va.) (01.03.2016)
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Journal Article
Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation
Calvert, Andrea E., Chalastanis, Alexandra, Wu, Yongfei, Hurley, Lisa A., Kouri, Fotini M., Bi, Yingtao, Kachman, Maureen, May, Jasmine L., Bartom, Elizabeth, Hua, Youjia, Mishra, Rama K., Schiltz, Gary E., Dubrovskyi, Oleksii, Mazar, Andrew P., Peter, Marcus E., Zheng, Hongwu, James, C. David, Burant, Charles F., Chandel, Navdeep S., Davuluri, Ramana V., Horbinski, Craig, Stegh, Alexander H.
Published in Cell reports (Cambridge) (30.05.2017)
Published in Cell reports (Cambridge) (30.05.2017)
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Journal Article
Immune landscapes associated with different glioblastoma molecular subtypes
Martinez-Lage, Maria, Lynch, Timothy M, Bi, Yingtao, Cocito, Carolina, Way, Gregory P, Pal, Sharmistha, Haller, Josephine, Yan, Rachel E, Ziober, Amy, Nguyen, Aivi, Kandpal, Manoj, O'Rourke, Donald M, Greenfield, Jeffrey P, Greene, Casey S, Davuluri, Ramana V, Dahmane, Nadia
Published in Acta neuropathologica communications (29.11.2019)
Published in Acta neuropathologica communications (29.11.2019)
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Journal Article
Fibroblast activation protein expression by stromal cells and tumor-associated macrophages in human breast cancer
Tchou, Julia, Zhang, Paul J, Bi, Yingtao, Satija, Celine, Marjumdar, Rajrupa, Stephen, Tom L, Lo, Albert, Chen, Haiying, Mies, Carolyn, June, Carl H, Conejo-Garcia, Jose, Puré, Ellen
Published in Human pathology (01.11.2013)
Published in Human pathology (01.11.2013)
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Journal Article
Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer
Wang, Yiyang, Liu, Xianpeng, Zhou, Li, Duong, Duc, Bhuripanyo, Karan, Zhao, Bo, Zhou, Han, Liu, Ruochuan, Bi, Yingtao, Kiyokawa, Hiroaki, Yin, Jun
Published in Nature communications (20.12.2017)
Published in Nature communications (20.12.2017)
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Journal Article
Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes
Liu, Xianpeng, Zhao, Bo, Sun, Limin, Bhuripanyo, Karan, Wang, Yiyang, Bi, Yingtao, Davuluri, Ramana V., Duong, Duc M., Nanavati, Dhaval, Yin, Jun, Kiyokawa, Hiroaki
Published in Nature communications (30.01.2017)
Published in Nature communications (30.01.2017)
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Journal Article
Multi-Omics Characterization of Colon Mucosa and Submucosa/Wall from Crohn's Disease Patients
Jin, Liang, Macoritto, Michael, Wang, Jing, Bi, Yingtao, Wang, Fei, Suarez-Fueyo, Abel, Paez-Cortez, Jesus, Hu, Chenqi, Knight, Heather, Mascanfroni, Ivan, Staron, Matthew M, Schwartz Sterman, Annette, Houghton, Jean Marie, Westmoreland, Susan, Tian, Yu
Published in International journal of molecular sciences (01.05.2024)
Published in International journal of molecular sciences (01.05.2024)
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Journal Article
Immunopathogenesis of hidradenitis suppurativa and response to anti-TNF-α therapy
Lowe, Margaret M, Naik, Haley B, Clancy, Sean, Pauli, Mariela, Smith, Kathleen M, Bi, Yingtao, Dunstan, Robert, Gudjonsson, Johann E, Paul, Maia, Harris, Hobart, Kim, Esther, Shin, Uk Sok, Ahn, Richard, Liao, Wilson, Hansen, Scott L, Rosenblum, Michael D
Published in JCI insight (02.10.2020)
Published in JCI insight (02.10.2020)
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Journal Article
Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia
Glass, Carolyn, Wuertzer, Charles, Cui, Xiaohui, Bi, Yingtao, Davuluri, Ramana, Xiao, Ying-Yi, Wilson, Michael, Owens, Kristina, Zhang, Yi, Perkins, Archibald
Published in PloS one (27.06.2013)
Published in PloS one (27.06.2013)
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Journal Article
Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma
Walsh, Alice M, Kapoor, Gurpreet S, Buonato, Janine M, Mathew, Lijoy K, Bi, Yingtao, Davuluri, Ramana V, Martinez-Lage, Maria, Simon, M Celeste, O'Rourke, Donald M, Lazzara, Matthew J
Published in Molecular cancer research (01.08.2015)
Published in Molecular cancer research (01.08.2015)
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Journal Article
Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model
Malchenko, Sergey, Sredni, Simone Treiger, Bi, Yingtao, Margaryan, Naira V, Boyineni, Jerusha, Mohanam, Indra, Tomita, Tadanori, Davuluri, Ramana V, Soares, Marcelo B
Published in PloS one (01.03.2017)
Published in PloS one (01.03.2017)
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Journal Article
Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized Sequential Window Acquisition of All THeoretical Mass Spectra (SWATH) Proteomics Workflow
Jin, Liang, Wang, Fei, Wang, Xue, Harvey, Bohdan P, Bi, Yingtao, Hu, Chenqi, Cui, Baoliang, Darcy, Anhdao T, Maull, John W, Phillips, Ben R, Kim, Youngjae, Jenkins, Gary J, Sornasse, Thierry R, Tian, Yu
Published in Proteomes (16.10.2023)
Published in Proteomes (16.10.2023)
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Journal Article
Immunopathogenesis of hidradenitis suppurativa and response to anti-TNF-α therapy
Lowe, Margaret M, Naik, Haley B, Clancy, Sean, Pauli, Mariela, Smith, Kathleen M, Bi, Yingtao, Dunstan, Robert, Gudjonsson, Johann E, Paul, Maia, Harris, Hobart, Kim, Esther, Shin, Uk Sok, Ahn, Richard, Liao, Wilson, Hansen, Scott L, Rosenblum, Michael D
Published in JCI insight (24.10.2022)
Published in JCI insight (24.10.2022)
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Journal Article